Refactoring search#32

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AtomicPhoenix wants to merge 11 commits intothoriumrobot:masterfrom

AtomicPhoenix:RefactoringSearch

Commits on Mar 2, 2026

Created function to search through input code for possible refactors and log them to a CSV file rather than refactor them
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Added Picocli argument parsing to program & moved all argument parsing logic to entrypoint (VGRTool.java)
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Cleaned diff
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Added search result outputs to gitignore
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Updating to use new Argument Parsing method
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Fixed missing variable error
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Applied spotless
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Updated testing engine to use new RefactoringEngine
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Merge branch 'ArgParsing' into RefactoringSearch
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Removed duplicate prevention for passed refactoring modules
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Merge branch 'ArgParsing' into RefactoringSearch
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