rethink parser

.github/workflows/ci.yml

@@ -127,6 +127,14 @@ jobs:
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}  
+      # On the Julia “pre” matrix entries, drop the unsupported test-only package
+      - name: Strip JET references on pre Julia
+        if: matrix.version == 'pre'
+        run: |
+          sed -i -e '/^[[:space:]]*JET[[:space:]]*=/d' \
+                 -e '/^\[targets\]/,$s/,[[:space:]]*"JET"//g' \
+                 -e '/^\[targets\]/,$s/"JET",[[:space:]]*//g' \
+                 Project.toml
       - name: Set Custom Test Environment Variable (Windows)
         if: matrix.os == 'windows-latest'
         run: echo "TEST_SET=${{ matrix.test_set }}" | Out-File -Append -FilePath $env:GITHUB_ENV -Encoding utf8

.github/workflows/github-repo-stats.yml

@@ -0,0 +1,20 @@
+name: github-repo-stats
+
+on:
+  schedule:
+    # Run this once per day, towards the end of the day for keeping the most
+    # recent data point most meaningful (hours are interpreted in UTC).
+    - cron: "0 23 * * *"
+  workflow_dispatch: # Allow for running this manually.
+
+jobs:
+  j1:
+    name: github-repo-stats
+    runs-on: ubuntu-latest
+    steps:
+      - name: run-ghrs
+        # Use latest release.
+        uses: jgehrcke/github-repo-stats@RELEASE
+        with:
+          ghtoken: ${{ secrets.ghrs_github_api_token }}
+

AGENTS.md

@@ -0,0 +1,9 @@
+- if you need to run julia use: 'curl -fsSL https://install.julialang.org -o juliaup.sh\nsh juliaup.sh --yes --default-channel release\nexport PATH="$HOME/.juliaup/bin:$PATH"' to install it
+- dont use the test suite to test changes. just pick a few models from the test_models.jl and run those commands
+- use the package "BenchmarkTools" to run benchmarks
+- if asked to benchmark different implementation have a look at the benchmarks.jl script in the benchmark folder
+- for benchmarks have a look at the benchmarks.jl script in the benchmark folder
+- try first to install R packages with micromamba and then using install.packages()
+- when implementing new functionality for the MacroModelling.jl package try to test it by writing a bespoke script for that functionality only, and avoid precomiling the whole MacroModelling package
+- run julia with -t auto
+- use this to install micromamba: "curl -Ls https://micro.mamba.pm/install.sh | MAMBA_NO_BANNER=1 MAMBA_NO_PROMPT=1 bash -s -- -b -u -p ~/micromamba"

Project.toml

@@ -21,6 +21,7 @@ LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
 LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 LinearOperators = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125"
+LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
 LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890"
 MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
 MatrixEquations = "99c1a7ee-ab34-5fd5-8076-27c950a045f4"
@@ -49,6 +50,7 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd"
 Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
 
 [compat]
+ADTypes = "1.14.0"
 Accessors = "0.1"
 Aqua = "0.8"
 AxisKeys = "0.2"
@@ -58,20 +60,21 @@ ChainRulesCore = "1"
 Combinatorics = "1"
 DataFrames = "1"
 DataStructures = "0.18"
-DifferentiationInterface = "0.6"
+DifferentiationInterface = "0.6,0.7"
 DispatchDoctor = "0.4"
 DocStringExtensions = "0.8, 0.9"
-DynamicPPL = "0.23 - 0.34"
+DynamicPPL = "0.23 - 0.36"
 DynarePreprocessor_jll = "6"
 FiniteDifferences = "0.12"
-ForwardDiff = "0.10"
+ForwardDiff = "0.10, 1"
 JET = "0.7, 0.8, 0.9"
 JSON = "0.21"
-Krylov = "0.9"
+Krylov = "0.10"
 LaTeXStrings = "1"
 LineSearches = "7"
 LinearAlgebra = "1"
 LinearOperators = "2"
+LinearSolve = "3"
 LoopVectorization = "0.12"
 MCMCChains = "6"
 MacroTools = "0.5"
@@ -98,12 +101,13 @@ SymPyPythonCall = "0.2 - 0.5"
 Symbolics = "5, 6"
 Test = "1"
 ThreadedSparseArrays = "0.2.3"
-Turing = "0.30 - 0.36"
+Turing = "0.30 - 0.39"
 Unicode = "1"
 Zygote = "0.6, 0.7"
 julia = "1.10"
 
 [extras]
+ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
 Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
@@ -121,4 +125,4 @@ Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
 Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [targets]
-test = ["Aqua", "JET", "CSV", "DataFrames", "DynamicPPL", "MCMCChains", "LineSearches", "Optim", "Test", "Turing", "Pigeons", "FiniteDifferences", "Zygote", "StatsPlots", "Preferences"]
+test = ["ADTypes", "Aqua", "JET", "CSV", "DataFrames", "DynamicPPL", "MCMCChains", "LineSearches", "Optim", "Test", "Turing", "Pigeons", "FiniteDifferences", "Zygote", "StatsPlots", "Preferences"]