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Welcome to the nipic wiki!

Used tools

• python : language for packages that process neuroimaging data, scripting
• nibabel : neuroimaging data manipulation (nifti & gifti), pip install --user nibabel
• freesurfer : MRI processing (segmentation, morphometry)
• pysurfer : plots generation pip install --user vtk mayavi pysurfer
• dipy : process DTI data pip install --user dipy

Misc

• Generate slice and MIP snapshots of MRI volumes

Freesurfer documentation and extra tools:

• Surface outputs of recon all: meshes and morphometrics

• Extract surfaces of subcortical structures