tfwillems
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HipSTR Public
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
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pysam-fix-type-hints Public
Forked from pysam-developers/pysamPysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
C MIT License UpdatedJan 6, 2023 -
pandera Public
Forked from unionai-oss/panderaA light-weight, flexible, and expressive data validation library for dataframes
Python MIT License UpdatedApr 19, 2022 -
alibaseq Public
Forked from AlexKnyshov/alibaseqAlignment-Based Sequence extraction
Python MIT License UpdatedApr 1, 2021 -
Cas12a Public
Scripts for: "Optimization of AsCas12a for combinatorial genetic screens in human cells"
HTML UpdatedAug 28, 2019 -
DownloadHGDP Public
Simple repository to download and collate WGS data for several hundred HGDP samples from the ENA
Shell GNU General Public License v3.0 UpdatedNov 16, 2018 -
gatk4-germline-snps-indels Public
Forked from gatk-workflows/gatk4-germline-snps-indelsWorkflows for germline short variant discovery with GATK4
WDL BSD 3-Clause "New" or "Revised" License UpdatedMay 2, 2018 -
bam-manipulator Public
Easily perform various operations on BAM files
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fusion_twas Public
Forked from gusevlab/fusion_twasmethods for functional summary-based imputation
R GNU General Public License v3.0 UpdatedFeb 23, 2017 -
read-stitcher Public
Efficiently merge overlapping paired-end reads using suffix trees
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kmer-counter Public
Rapidly counter kmers in FASTA or FASTQ files
GNU General Public License v3.0 UpdatedJan 10, 2017 -
EMContaminator Public
Infer contamination fraction in sequencing data using an EM algorithm
C++ GNU General Public License v3.0 UpdatedSep 13, 2016 -
MUTEA Public
Python package to simulate and estimate Y-STR mutation models
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PhasedBEAGLE Public
Version of BEAGLE capable of outputting phased genotype probabilities
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