This includes all original codes analysing a public spatial RNAseq dataset under accession number GSE188257 on GEO database.
- step0-customized_functions: R script including customized functions for data visualization and analysis
- step1-import_data：R script for importing and formatting spatial RNAseq profile
- stpep2-global_analysis1: R script for global analysis such as data cleaning, cell clustering
- stpep3-global_analysis2: R script for global analysis such as data visualization
- stpep4-follicle_subcluster_analysis: R script for doing analysis in follicle subpopulation
- stpep5-oocyte_subcluster_analysis: R script for doing analysis in oocyte subpopulation
Data are available on reasonable request. The main data relevant to the study are included in the article or uploaded as supplementary information. f.tang@adelaide.edu.au