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58 changes: 58 additions & 0 deletions src/scripts/python/test_argparse.py
Original file line number Diff line number Diff line change
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#! /usr/bin/env python
#
# test how to parse sections of a CLI using argparse
# For example:
# ./test_docopt.py -i file1 -x 2 -y 1 -i file2 -x 10 -i file3

"""Usage: rsr_fit.py [options]

Options:
-i --input TABLE Input table, followed by more options. No default.
-x --xcol XCOL X Column(s). [Default: 1]
-y --ycol YCOL Y Column(s). [Default: 2]
-h --help This help
-d --debug More debug output
-v --version Show version

Parsing ideas for plotting tables
"""

import sys, argparse

print('argv:', sys.argv)

# find the -i sections in sys.argv
argv = sys.argv[1:]
inputs = [i for i, x in enumerate(argv) if x == '-i' or x == '--input']
print('inputs:',inputs)

# loop over the input files
nf = len(inputs)
if nf == 1:
inputs2 = [len(argv)]
else:
inputs2 = inputs[1:] + [len(argv)]

print('inputs2:',inputs2)

# Defining parser
# add_argument attaches individual assignment specifications to the parser

# Add help
parser = argparse.ArgumentParser()
parser.add_argument('-i', '--input', required=True) # -i/--input argument
parser.add_argument('-x', '--xcol', default=1, type=int)
parser.add_argument('-y', '--ycol', default=2, type=int)

# Store parsed results
avs = []
for i in range(len(inputs)):
section_args = argv[inputs[i]:inputs2[i]]
print(f"\nGroup {i}: {section_args}")
av = parser.parse_args(section_args)
print(f"Parsed av[{i}]:", av)
avs.append(av)


#print(avs)

57 changes: 57 additions & 0 deletions src/scripts/python/test_docopt.py
Original file line number Diff line number Diff line change
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#! /usr/bin/env python
#
# test how to parse sections of a CLI
# Using docopt, but should be no different from e.g. argparse
# For example:
# ./test_docopt.py -i file1 -x 2 -y 1 -i file2 -x 10 -i file3

"""Usage: rsr_fit.py [options]

Options:
-i --input TABLE Input table, followed by more options. No default.
-x --xcol XCOL X Column(s). [Default: 1]
-y --ycol YCOL Y Column(s). [Default: 2]
-h --help This help
-d --debug More debug output
-v --version Show version

Parsing ideas for plotting tables
"""

_version = "24-apr-2025"

import os
import sys
import numpy as np
from docopt import docopt
import matplotlib.pyplot as plt

# only once to process help and version?
#av = docopt(__doc__,options_first=True, version='test_docopt %s' % _version)


# show input
print('argv:',sys.argv)

# find the -i sections in sys.argv

argv = sys.argv[1:]
inputs = [i for i, x in enumerate(argv) if x == '-i' or x == '--input']
print('inputs:',inputs)


# loop over the input files
nf = len(inputs)
if nf == 1:
inputs2 = [len(argv)]
else:
inputs2 = inputs[1:] + [len(argv)]

print('inputs2:',inputs2)

for i in range(len(inputs)):
print(i,argv[inputs[i]:inputs2[i]])
sys.argv[1:] = argv[inputs[i]:inputs2[i]]
print(sys.argv)
av = docopt(__doc__,options_first=True, version='test_docopt %s' % _version)
print(av)