added quotes to PopGenome package name and replaced some dontrun by d…

…onttest

DESCRIPTION

@@ -21,7 +21,7 @@ Description: Coalescent simulators can rapidly simulate biological sequences
     mutation models by combining the simulators with the program 'seq-gen'.
     Coala provides functions for calculating certain summary statistics, which
     can also be applied to actual biological data.
-    One possibility to import data is through the PopGenome package
+    One possibility to import data is through the 'PopGenome' package
     (<https://github.com/pievos101/PopGenome>).
 Depends: R (>= 3.1.0)
 Imports: assertthat (>= 0.1), digest, methods, parallel, R6 (>= 2.0.1),
@@ -50,7 +50,7 @@ Collate: 'RcppExports.R' 'cache.R' 'coala.R' 'model.R' 'feature.R'
         'sumstat_nucleotide_div.R' 'sumstat_omega.R'
         'sumstat_seg_sites.R' 'sumstat_sfs.R' 'sumstat_tajimas_d.R'
         'sumstat_trees.R' 'tools.R'
-RoxygenNote: 7.2.2
+RoxygenNote: 7.2.3
 NeedsCompilation: yes
 Packaged: 2022-12-09 15:19:34 UTC; dirk
 Maintainer: Dirk Metzler <[email protected]>

R/feature_mutation.R

@@ -135,7 +135,7 @@ mutation_class <- R6Class("mutation", inherit = feature_class,
 #' model <- coal_model(5, 1) +
 #'   feat_mutation(7, fixed = TRUE) +
 #'   sumstat_seg_sites()
-#' \dontrun{simulate(model)}
+#' \donttest{simulate(model)}
 #'
 #' # A model using the HKY model:
 #' model <- coal_model(c(10, 1), 2) +

R/sumstat_ihh.R

@@ -144,7 +144,7 @@ stat_ihh_class <- R6Class("stat_ihh", inherit = sumstat_class,
 #'   model <- coal_model(20, 1, 1000) +
 #'     feat_mutation(1000) +
 #'     sumstat_ihh()
-#' \dontrun{
+#' \donttest{
 #'     stat <- simulate(model)
 #'     print(stat$ihh)}
 #' @author Paul Staab