Add cascades to APLinear

core/src/main/java/edu/stanford/futuredata/macrobase/pipeline/CubePipeline.java

@@ -5,10 +5,7 @@
 import edu.stanford.futuredata.macrobase.analysis.classify.PredicateCubeClassifier;
 import edu.stanford.futuredata.macrobase.analysis.classify.QuantileClassifier;
 import edu.stanford.futuredata.macrobase.analysis.classify.RawClassifier;
-import edu.stanford.futuredata.macrobase.analysis.summary.aplinear.APLExplanation;
-import edu.stanford.futuredata.macrobase.analysis.summary.aplinear.APLMeanSummarizer;
-import edu.stanford.futuredata.macrobase.analysis.summary.aplinear.APLOutlierSummarizer;
-import edu.stanford.futuredata.macrobase.analysis.summary.aplinear.APLSummarizer;
+import edu.stanford.futuredata.macrobase.analysis.summary.aplinear.*;
 import edu.stanford.futuredata.macrobase.datamodel.DataFrame;
 import edu.stanford.futuredata.macrobase.datamodel.Schema;
 import edu.stanford.futuredata.macrobase.ingest.CSVDataFrameWriter;
@@ -50,7 +47,10 @@ public class CubePipeline implements Pipeline {
     private boolean includeLo;
     private Optional<String> meanColumn;
     private Optional<String> stdColumn;
+    private Optional<String> minColumn;
+    private Optional<String> maxColumn;
     private LinkedHashMap<String, Double> quantileColumns;
+    private List<String> momentColumns;
 
     // Explanation
     private List<String> attributes;
@@ -88,7 +88,10 @@ public CubePipeline(PipelineConfig conf) {
         includeLo = conf.get("includeLo", true);
         meanColumn = Optional.ofNullable(conf.get("meanColumn"));
         stdColumn = Optional.ofNullable(conf.get("stdColumn"));
+        minColumn = Optional.ofNullable(conf.get("minColumn"));
+        maxColumn = Optional.ofNullable(conf.get("maxColumn"));
         quantileColumns = conf.get("quantileColumns", new LinkedHashMap<String, Double>());
+        momentColumns = conf.get("momentColumns", new ArrayList<String>());
 
         attributes = conf.get("attributes");
         minSupport = conf.get("minSupport", 3.0);
@@ -173,6 +176,18 @@ private Map<String, Schema.ColType> getColTypes() throws MacrobaseException {
                 }
                 return colTypes;
             }
+            case "moment": {
+                for (String col : momentColumns) {
+                    colTypes.put(col, Schema.ColType.DOUBLE);
+                }
+                colTypes.put(minColumn
+                                .orElseThrow(() -> new MacrobaseException("min column not present in config")),
+                        Schema.ColType.DOUBLE);
+                colTypes.put(maxColumn
+                                .orElseThrow(() -> new MacrobaseException("max column not present in config")),
+                        Schema.ColType.DOUBLE);
+                return colTypes;
+            }
             case "raw": {
                 colTypes.put(meanColumn.orElseThrow(
                     () -> new MacrobaseException("mean column not present in config")),
@@ -216,6 +231,12 @@ private CubeClassifier getClassifier() throws MacrobaseException {
                         () -> new MacrobaseException("metric column not present in config")),
                     predicateStr, cutoff);
             }
+            case "moment": {
+                return new RawClassifier(
+                        countColumn,
+                        null
+                );
+            }
 
             case "meanshift":
             case "raw": {
@@ -244,6 +265,19 @@ private APLSummarizer getSummarizer(CubeClassifier classifier) throws Exception
                 summarizer.setMinStdDev(minRatioMetric);
                 return summarizer;
             }
+            case "moment": {
+                APLMomentSummarizer summarizer = new APLMomentSummarizer();
+                summarizer.setMinColumn(minColumn.orElseThrow(
+                        () -> new MacrobaseException("min column not present in config")));
+                summarizer.setMaxColumn(maxColumn.orElseThrow(
+                        () -> new MacrobaseException("max column not present in config")));
+                summarizer.setMomentColumns(momentColumns);
+                summarizer.setAttributes(attributes);
+                summarizer.setMinSupport(minSupport);
+                summarizer.setMinRatioMetric(minRatioMetric);
+                summarizer.setPercentile(cutoff);
+                return summarizer;
+            }
             default: {
                 APLOutlierSummarizer summarizer = new APLOutlierSummarizer();
                 summarizer.setOutlierColumn(classifier.getOutputColumnName());

lib/cp.txt

@@ -0,0 +1 @@
+/Users/Jialin/.m2/repository/junit/junit/4.12/junit-4.12.jar:/Users/Jialin/.m2/repository/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar:/Users/Jialin/.m2/repository/log4j/log4j/1.2.17/log4j-1.2.17.jar:/Users/Jialin/.m2/repository/org/slf4j/slf4j-log4j12/1.8.0-beta0/slf4j-log4j12-1.8.0-beta0.jar:/Users/Jialin/.m2/repository/org/slf4j/slf4j-api/1.8.0-beta0/slf4j-api-1.8.0-beta0.jar:/Users/Jialin/.m2/repository/com/google/guava/guava/21.0/guava-21.0.jar:/Users/Jialin/.m2/repository/org/apache/commons/commons-math3/3.6/commons-math3-3.6.jar:/Users/Jialin/.m2/repository/com/univocity/univocity-parsers/2.5.9/univocity-parsers-2.5.9.jar:/Users/Jialin/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.8.9/jackson-databind-2.8.9.jar:/Users/Jialin/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.8.0/jackson-annotations-2.8.0.jar:/Users/Jialin/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.8.9/jackson-core-2.8.9.jar:/Users/Jialin/.m2/repository/futuredata/java-msketch/1.0-SNAPSHOT/java-msketch-1.0-SNAPSHOT.jar:/Users/Jialin/.m2/repository/org/apache/commons/commons-csv/1.5/commons-csv-1.5.jar:/Users/Jialin/.m2/repository/com/tdunning/t-digest/3.2/t-digest-3.2.jar:/Users/Jialin/.m2/repository/com/yahoo/datasketches/sketches-core/0.10.3/sketches-core-0.10.3.jar:/Users/Jialin/.m2/repository/com/yahoo/datasketches/memory/0.10.3/memory-0.10.3.jar:/Users/Jialin/.m2/repository/org/apache/spark/spark-catalyst_2.11/2.2.1/spark-catalyst_2.11-2.2.1.jar:/Users/Jialin/.m2/repository/org/scala-lang/scala-reflect/2.11.8/scala-reflect-2.11.8.jar:/Users/Jialin/.m2/repository/org/scala-lang/scala-library/2.11.8/scala-library-2.11.8.jar:/Users/Jialin/.m2/repository/org/apache/spark/spark-core_2.11/2.2.1/spark-core_2.11-2.2.1.jar:/Users/Jialin/.m2/repository/org/apache/avro/avro/1.7.7/avro-1.7.7.jar:/Users/Jialin/.m2/repository/org/codehaus/jackson/jackson-core-asl/1.9.13/jackson-core-asl-1.9.13.jar:/Users/Jialin/.m2/repository/org/codehaus/jackson/jackson-mapper-asl/1.9.13/jackson-mapper-asl-1.9.13.jar:/Users/Jialin/.m2/repository/com/thoughtworks/paranamer/paranamer/2.3/paranamer-2.3.jar:/Users/Jialin/.m2/repository/org/apache/commons/commons-compress/1.4.1/commons-compress-1.4.1.jar:/Users/Jialin/.m2/repository/org/tukaani/xz/1.0/xz-1.0.jar:/Users/Jialin/.m2/repository/org/apache/avro/avro-mapred/1.7.7/avro-mapred-1.7.7-hadoop2.jar:/Users/Jialin/.m2/repository/org/apache/avro/avro-ipc/1.7.7/avro-ipc-1.7.7.jar:/Users/Jialin/.m2/repository/org/apache/avro/avro-ipc/1.7.7/avro-ipc-1.7.7-tests.jar:/Users/Jialin/.m2/repository/com/twitter/chill_2.11/0.8.0/chill_2.11-0.8.0.jar:/Users/Jialin/.m2/repository/com/esotericsoftware/kryo-shaded/3.0.3/kryo-shaded-3.0.3.jar:/Users/Jialin/.m2/repository/com/esotericsoftware/minlog/1.3.0/minlog-1.3.0.jar:/Users/Jialin/.m2/repository/org/objenesis/objenesis/2.1/objenesis-2.1.jar:/Users/Jialin/.m2/repository/com/twitter/chill-java/0.8.0/chill-java-0.8.0.jar:/Users/Jialin/.m2/repository/org/apache/xbean/xbean-asm5-shaded/4.4/xbean-asm5-shaded-4.4.jar:/Users/Jialin/.m2/repository/org/apache/hadoop/hadoop-client/2.6.5/hadoop-client-2.6.5.jar:/Users/Jialin/.m2/repository/org/apache/hadoop/hadoop-common/2.6.5/hadoop-common-2.6.5.jar:/Users/Jialin/.m2/repository/commons-cli/commons-cli/1.2/commons-cli-1.2.jar:/Users/Jialin/.m2/repository/xmlenc/xmlenc/0.52/xmlenc-0.52.jar:/Users/Jialin/.m2/repository/commons-httpclient/commons-httpclient/3.1/commons-httpclient-3.1.jar:/Users/Jialin/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar:/Users/Jialin/.m2/repository/commons-collections/commons-collections/3.2.2/commons-collections-3.2.2.jar:/Users/Jialin/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar:/Users/Jialin/.m2/repository/commons-configuration/commons-configuration/1.6/commons-configuration-1.6.jar:/Users/Jialin/.m2/repository/commons-digester/commons-digester/1.8/commons-digester-1.8.jar:/Users/Jialin/.m2/repository/commons-beanutils/commons-beanutils/1.7.0/commons-beanutils-1.7.0.jar:/Users/Jialin/.m2/repository/commons-beanutils/commons-beanutils-core/1.8.0/commons-beanutils-core-1.8.0.jar:/Users/Jialin/.m2/repository/com/google/protobuf/protobuf-java/2.5.0/protobuf-java-2.5.0.jar:/Users/Jialin/.m2/repository/com/google/code/gson/gson/2.2.4/gson-2.2.4.jar:/Users/Jialin/.m2/repository/org/apache/hadoop/hadoop-auth/2.6.5/hadoop-auth-2.6.5.jar:/Users/Jialin/.m2/repository/org/apache/directory/server/apacheds-kerberos-codec/2.0.0-M15/apacheds-kerberos-codec-2.0.0-M15.jar:/Users/Jialin/.m2/repository/org/apache/directory/server/apacheds-i18n/2.0.0-M15/apacheds-i18n-2.0.0-M15.jar:/Users/Jialin/.m2/repository/org/apache/directory/api/api-asn1-api/1.0.0-M20/api-asn1-api-1.0.0-M20.jar:/Users/Jialin/.m2/repository/org/apache/directory/api/api-util/1.0.0-M20/api-util-1.0.0-M20.jar:/Users/Jialin/.m2/repository/org/apache/curator/curator-client/2.6.0/curator-client-2.6.0.jar:/Users/Jialin/.m2/repository/org/htrace/htrace-core/3.0.4/htrace-core-3.0.4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2/hk2-api/2.4.0-b34/hk2-api-2.4.0-b34.jar:/Users/Jialin/.m2/repository/org/glassfish/hk2/hk2-utils/2.4.0-b34/hk2-utils-2.4.0-b34.jar:/Users/Jialin/.m2/repository/org/glassfish/hk2/external/aopalliance-repackaged/2.4.0-b34/aopalliance-repackaged-2.4.0-b34.jar:/Users/Jialin/.m2/repository/org/glassfish/hk2/external/javax.inject/2.4.0-b34/javax.inject-2.4.0-b34.jar:/Users/Jialin/.m2/repository/org/glassfish/hk2/hk2-locator/2.4.0-b34/hk2-locator-2.4.0-b34.jar:/Users/Jialin/.m2/repository/org/javassist/javassist/3.18.1-GA/javassist-3.18.1-GA.jar:/Users/Jialin/.m2/repository/org/glassfish/jersey/core/jersey-common/2.22.2/jersey-common-2.22.2.jar:/Users/Jialin/.m2/repository/javax/annotation/javax.annotation-api/1.2/javax.annotation-api-1.2.jar:/Users/Jialin/.m2/repository/org/glassfish/jersey/bundles/repackaged/jersey-guava/2.22.2/jersey-guava-2.22.2.jar:/Users/Jialin/.m2/repository/org/glassfish/hk2/osgi-resource-locator/1.0.1/osgi-resource-locator-1.0.1.jar:/Users/Jialin/.m2/repository/org/glassfish/jersey/core/jersey-server/2.22.2/jersey-server-2.22.2.jar:/Users/Jialin/.m2/repository/org/glassfish/jersey/media/jersey-media-jaxb/2.22.2/jersey-media-jaxb-2.22.2.jar:/Users/Jialin/.m2/repository/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final.jar:/Users/Jialin/.m2/repository/org/glassfish/jersey/containers/jersey-container-servlet/2.22.2/jersey-container-servlet-2.22.2.jar:/Users/Jialin/.m2/repository/org/glassfish/jersey/containers/jersey-container-servlet-core/2.22.2/jersey-container-servlet-core-2.22.2.jar:/Users/Jialin/.m2/repository/io/netty/netty-all/4.0.43.Final/netty-all-4.0.43.Final.jar:/Users/Jialin/.m2/repository/io/netty/netty/3.9.9.Final/netty-3.9.9.Final.jar:/Users/Jialin/.m2/repository/com/clearspring/analytics/stream/2.7.0/stream-2.7.0.jar:/Users/Jialin/.m2/repository/io/dropwizard/metrics/metrics-core/3.1.2/metrics-core-3.1.2.jar:/Users/Jialin/.m2/repository/io/dropwizard/metrics/metrics-jvm/3.1.2/metrics-jvm-3.1.2.jar:/Users/Jialin/.m2/repository/io/dropwizard/metrics/metrics-json/3.1.2/metrics-json-3.1.2.jar:/Users/Jialin/.m2/repository/io/dropwizard/metrics/metrics-graphite/3.1.2/metrics-graphite-3.1.2.jar:/Users/Jialin/.m2/repository/com/fasterxml/jackson/module/jackson-module-scala_2.11/2.6.5/jackson-module-scala_2.11-2.6.5.jar:/Users/Jialin/.m2/repository/com/fasterxml/jackson/module/jackson-module-paranamer/2.6.5/jackson-module-paranamer-2.6.5.jar:/Users/Jialin/.m2/repository/org/apache/ivy/ivy/2.4.0/ivy-2.4.0.jar:/Users/Jialin/.m2/repository/oro/oro/2.0.8/oro-2.0.8.jar:/Users/Jialin/.m2/repository/net/razorvine/pyrolite/4.13/pyrolite-4.13.jar:/Users/Jialin/.m2/repository/net/sf/py4j/py4j/0.10.4/py4j-0.10.4.jar:/Users/Jialin/.m2/repository/org/apache/commons/commons-crypto/1.0.0/commons-crypto-1.0.0.jar:/Users/Jialin/.m2/repository/org/apache/spark/spark-tags_2.11/2.2.1/spark-tags_2.11-2.2.1.jar:/Users/Jialin/.m2/repository/org/apache/spark/spark-unsafe_2.11/2.2.1/spark-unsafe_2.11-2.2.1.jar:/Users/Jialin/.m2/repository/org/apache/spark/spark-sketch_2.11/2.2.1/spark-sketch_2.11-2.2.1.jar:/Users/Jialin/.m2/repository/org/codehaus/janino/janino/3.0.0/janino-3.0.0.jar:/Users/Jialin/.m2/repository/org/codehaus/janino/commons-compiler/3.0.0/commons-compiler-3.0.0.jar:/Users/Jialin/.m2/repository/org/antlr/antlr4-runtime/4.5.3/antlr4-runtime-4.5.3.jar:/Users/Jialin/.m2/repository/commons-codec/commons-codec/1.10/commons-codec-1.10.jar:/Users/Jialin/.m2/repository/org/spark-project/spark/unused/1.0.0/unused-1.0.0.jar

lib/genCP.sh

@@ -0,0 +1,2 @@
+#!/usr/bin/env bash
+mvn dependency:build-classpath -Dmdep.outputFile=cp.txt

lib/momentBench.json

@@ -0,0 +1,13 @@
+{
+  "minSupport": 0.005,
+  "percentile": 1.0,
+  "outlierColumn": "outliers1",
+  "numWarmupTrials": 10,
+  "numTrials": 10,
+  "oracleCubeFilename": "src/test/resources/milan_oracle_cubed.csv",
+  "momentCubeFilename": "src/test/resources/milan_moments_cubed.csv",
+  "attributes": [
+    "Grid",
+    "Country"
+  ]
+}

lib/momentBench.sh

@@ -0,0 +1,2 @@
+#!/usr/bin/env bash
+java -Xmx8g -Xms8g -cp target/macrobase-lib-0.2.1-SNAPSHOT.jar:$(cat cp.txt) edu.stanford.futuredata.macrobase.APLMomentSummarizerBench $@

lib/pom.xml

@@ -81,6 +81,11 @@
             <artifactId>jackson-databind</artifactId>
             <version>2.8.9</version>
         </dependency>
+        <dependency>
+            <groupId>futuredata</groupId>
+            <artifactId>java-msketch</artifactId>
+            <version>1.0-SNAPSHOT</version>
+        </dependency>
     </dependencies>
 
     <distributionManagement>