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Merge pull request #450 from spsanderson/development
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Fixes #433
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spsanderson authored Apr 25, 2024
2 parents ac3079c + 6e098f1 commit cbf00ff
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1 change: 1 addition & 0 deletions NAMESPACE
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Expand Up @@ -91,6 +91,7 @@ export(util_bernoulli_stats_tbl)
export(util_beta_aic)
export(util_beta_param_estimate)
export(util_beta_stats_tbl)
export(util_binomial_aic)
export(util_binomial_param_estimate)
export(util_binomial_stats_tbl)
export(util_burr_param_estimate)
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62 changes: 62 additions & 0 deletions R/utils-aic-binomial.R
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#' Calculate Akaike Information Criterion (AIC) for Binomial Distribution
#'
#' This function calculates the Akaike Information Criterion (AIC) for a binomial
#' distribution fitted to the provided data.
#'
#' @family Utility
#' @author Steven P. Sanderson II, MPH
#'
#' @description
#' This function estimates the size and probability parameters of a binomial
#' distribution from the provided data and then calculates the AIC value based on
#' the fitted distribution.
#'
#' @param .x A numeric vector containing the data to be fitted to a binomial distribution.
#'
#' @details
#' This function fits a binomial distribution to the provided data. It estimates
#' the size and probability parameters of the binomial distribution from the data.
#' Then, it calculates the AIC value based on the fitted distribution.
#'
#' Initial parameter estimates: The function uses the method of moments estimates
#' as starting points for the size and probability parameters of the binomial distribution.
#'
#' Optimization method: Since the parameters are directly calculated from the data,
#' no optimization is needed.
#'
#' Goodness-of-fit: While AIC is a useful metric for model comparison, it's
#' recommended to also assess the goodness-of-fit of the chosen model using
#' visualization and other statistical tests.
#'
#' @examples
#' # Example 1: Calculate AIC for a sample dataset
#' set.seed(123)
#' x <- rbinom(30, size = 10, prob = 0.2)
#' util_binomial_aic(x)
#'
#' @return
#' The AIC value calculated based on the fitted binomial distribution to the provided data.
#'
#' @name util_binomial_aic
NULL

#' @export
#' @rdname util_binomial_aic
util_binomial_aic <- function(.x) {
# Tidyeval
x <- as.numeric(.x)

# Estimate size and probability parameters
# Total number of trials
size <- length(x)
sum_of_ones <- sum(x[x == 1])
prob <- sum_of_ones / size

# Calculate AIC
k_binomial <- 2 # Number of parameters for binomial distribution (size and prob)
logLik_binomial <- sum(stats::dbinom(x, size = size, prob = prob, log = TRUE))
AIC_binomial <- 2 * k_binomial - 2 * logLik_binomial

# Return AIC
return(AIC_binomial)
}
1 change: 1 addition & 0 deletions man/check_duplicate_rows.Rd

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1 change: 1 addition & 0 deletions man/util_beta_aic.Rd

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66 changes: 66 additions & 0 deletions man/util_binomial_aic.Rd

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1 change: 1 addition & 0 deletions man/util_cauchy_aic.Rd

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1 change: 1 addition & 0 deletions man/util_logistic_aic.Rd

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