Integration of 7T template (T2s and qT1) + atlas

[Nilser3]

Description

This PR implements the AMU7T template in PAM50.

The CRMBM Marseille team (Arnaud Le Troter and Virginie Callot) developed a 7T template (T2s and qT1) + atlas (50 labels) that was recently presented at ISMRM2023.

Alignment with PAM50 (T2s/T2s)

Alignment with PAM50 (T2/qT1)

Info about the template (T2s and qT1):

data_type       FLOAT32
dim1            110
dim2            90
dim3            223
dim4            1
datatype        16
pixdim1         0.175781
pixdim2         0.175781
pixdim3         0.500000
pixdim4         1.000000
cal_max         0.000000
cal_min         0.000000
file_type       NIFTI-1+

Atlas labels here and the multilabel atlas in PAM50/AMU7T/atlas/AMU7T_50_labels.nii.gz (this parcellation can be visualized in FSLeyes with this Lookup table)

Info about the atlas (parcelation and all labels):

data_type       UINT8
dim1            110
dim2            90
dim3            223
dim4            1
datatype        2
pixdim1         0.175781
pixdim2         0.175781
pixdim3         0.500000
pixdim4         1.000000
cal_max         0.000000
cal_min         0.000000
file_type       NIFTI-1+

Related issues

#13

[jcohenadad]

@Nilser3 can you please justify why you are closing this PR (eg, make a cross-reference to a discussion, etc.)

[Nilser3]

Closed because the integration of this template will be done in this new repo, discussed here.