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Repositories
- MetaMorpheus Public
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
- mzLibRust Public
mzLib for Rust — mass spectrometry and proteomics, over the same language-neutral bridge as pyMzLib.
- pyMzLib Public
mzLib for Python - mass spectrometry and proteomics from the mzLib C# library, with no .NET to install
- dataRepo Public
Software for an AI-ready repository of reanalyzed public proteomics data: versioned Parquet bundles, a DuckDB catalog, and an MCP server that answers with its provenance attached.
- PXReprise Public
Reprocess public ProteomeXchange/PRIDE proteomics data at scale, for any biological question (C#, mzLib, MetaMorpheus)
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- pyMetaMorpheus Public
MetaMorpheus, callable from Python — a dependency-free, faithful projection of the MetaMorpheus CLI.
- ProteaseGuru Public
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