| Pipeline (MetaWorkflow) | Repository | Change/Feature |
|---|---|---|
| Illumina_alignment_GRCh38 | main-pipelines | + Added local indel realignment + Added support for DRAGEN read names with UMI information + Added VerifyBamID + Added mosdepth |
| PacBio_alignment_GRCh38 | main-pipelines | + Added VerifyBamID + Added mosdepth |
| ONT_alignment_GRCh38 | main-pipelines | + Added mosdepth |
| Hi-C_alignment_GRCh38 | main-pipelines | + Added support for DRAGEN read names with UMI information + Added mosdepth |
| RNA-seq_bulk_short_reads_GRCh38 | main-pipelines | Pipeline released |
| Illumina_FASTQ_quality_metrics | qc-pipelines | + Added Kraken2 |
| short_reads_FASTQ_quality_metrics | qc-pipelines | + Added Kraken2 |
| long_reads_FASTQ_quality_metrics | qc-pipelines | Pipeline released |
| cram_to_fastq_paired-end | shared-pipelines | Pipeline released |
| bam_to_fastq_paired-end | shared-pipelines | No change since 0.0.1 |