little-bio-parser

A minimalistic parser for sequence alignments (fasta or stockholm formats).

The parser returns an iterator over the alignment records as (identifier, sequence) tuples.

Usage example:

>>> import lilbio
>>> parsed_records = lilbio.parse('alignment.fa', 'fasta')

Built over modified low-level parsers from Biopython (SimpleFastaParser function and StockholmIterator class).

Changes

0.8 (2019-05-27)

• Python3 only (>= 3.4)