Less hacky plotting classes#3209
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Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## main #3209 +/- ##
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- Coverage 76.85% 76.69% -0.16%
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Files 109 109
Lines 12554 12616 +62
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+ Hits 9648 9676 +28
- Misses 2906 2940 +34
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Instead of explicit old all-caps defaults, could be possible it to make a lookup of properties -> old all-caps defaults? And then have some sort of __get_attr__ or __get_attribute__ do the lookup and use the default? This might also make typing a bit easier maybe? Not sure though, just a quick first pass
| def vboundnorm(self) -> VBoundNorm: | ||
| return VBoundNorm(self.vmin, self.vmax, self.vcenter, self.norm) | ||
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| # deprecated class vars |
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Why deprecated? Because they are already set from elsewhere (the function-based API)?
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If so, why re-introduce?
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So these are part of the public API, the idea being to get rid of these eventually? https://scanpy.readthedocs.io/en/stable/api/generated/classes/scanpy.pl.StackedViolin.html
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Yeah, the default would be accessible like default = Baseplot.cmap, and overridable in subclasses:
class DotPlot(BasePlot):
cmap = "Blues"or just by setting it on the instance.
| # TODO: this doesn’t make much sense | ||
| self.category_height, self.category_width = ( | ||
| self.category_width, | ||
| self.category_height, | ||
| ) |
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Agreed needs some investigating (what's the counter-factual when we remove it?)
| norm=norm, | ||
| **kwds, | ||
| ) | ||
| DEFAULT_DOT_MAX: ClassVar[DefaultProxy[float | None]] = DefaultProxy("dot_max") |
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Unfortunate that the types need to be duplicated i.e., dot_max: float | None and then here DEFAULT_DOT_MAX: ClassVar[DefaultProxy[float | None]]
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Maybe worth creating type variables? Seems like that is more lines of code, though...
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An attempt to make the plotting classes less weird
contains a descriptor to allow the DEFAULT_BLAH class attributes to still work.
@ilan-gold please take a preliminary look