Add .h5 in extension using the 'same' reference in scil_tractogram_commit

[gagnonanthony]

Quick description

Reference was set to 'same' only if the input tractogram was a .trk, which made the following saving function fail. Simply added the .h5 in the extension possibilities.

Type of change

Check the relevant options.

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update

Provide data, screenshots, command line to test (if relevant)

error message:

DEBUG:root:Loading tractogram from /var/folders/23/p0fh1nrd473dtfz3cx_4g0j00000gn/T/tmpvd14_zqp/tractogram.trk with reference None.
Traceback (most recent call last):
  File "/Users/anthonygagnon/envs/scilus3.12/bin/scil_tractogram_commit", line 8, in <module>
    sys.exit(main())
             ^^^^^^
  File "/Users/anthonygagnon/code/scilpy/src/scilpy/cli/scil_tractogram_commit.py", line 487, in main
    _save_results(args, tmp_dir, ext, hdf5_file, offsets_list,
  File "/Users/anthonygagnon/code/scilpy/src/scilpy/cli/scil_tractogram_commit.py", line 247, in _save_results
    sft = load_tractogram(args.in_tractogram, args.reference)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/anthonygagnon/envs/scilus3.12/lib/python3.12/site-packages/dipy/testing/decorators.py", line 201, in wrapper
    return convert_positional_to_keyword(func, args, kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/anthonygagnon/envs/scilus3.12/lib/python3.12/site-packages/dipy/testing/decorators.py", line 192, in convert_positional_to_keyword
    return func(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/anthonygagnon/envs/scilus3.12/lib/python3.12/site-packages/dipy/io/streamline.py", line 154, in load_tractogram
    if not is_header_compatible(filename, reference):
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/anthonygagnon/envs/scilus3.12/lib/python3.12/site-packages/dipy/io/utils.py", line 376, in is_header_compatible
    affine_2, dimensions_2, voxel_sizes_2, voxel_order_2 = get_reference_info(
                                                           ^^^^^^^^^^^^^^^^^^^
  File "/Users/anthonygagnon/envs/scilus3.12/lib/python3.12/site-packages/dipy/io/utils.py", line 345, in get_reference_info
    raise TypeError("Input reference is not one of the supported format")
TypeError: Input reference is not one of the supported format

Checklist

• My code follows the style guidelines of this project (run autopep8)
• I added relevant citations to scripts, modules and functions docstrings and descriptions
• I have performed a self-review of my code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I moved all functions from the script file (except the argparser and main) to scilpy modules
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes

[AntoineTheb]

Does the .h5 have its own reference ? We commit omit one for TRKs as they include the ref's affine in their header. What about these .h5 ?

[AntoineTheb]

Also a duplicate of #1279 ?

[gagnonanthony]

Sorry I missed this yesterday, but yepp, it was included in #1279. I'm gonna close this one here, thanks @AntoineTheb !