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Tractoflow now uses root-->input #120

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Tractoflow now uses root-->input #120

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3 changes: 2 additions & 1 deletion source/heavy/computing.rst
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Expand Up @@ -65,7 +65,8 @@ Using Compute Canada for the first time

# User specific aliases and functions

module load java/1.8.0_192 singularity/3.5
module load java/11.0.2
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@CHrlS98 CHrlS98 Aug 19, 2025

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I looked at one of my recent sbatch and it starts with

module load nextflow/23.10.0 apptainer/1.3.4

And I don't have any other module load in my .bashrc so I think that's all you need.

module load singularity

#export PATH=$PATH:/home/USER/scripts # if you have scripts
export PATH=$PATH:$HOME/nextflow
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4 changes: 2 additions & 2 deletions source/tools/tractoflow.rst
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Expand Up @@ -79,8 +79,8 @@ Using Tractoflow on Compute Canada
# - Interface seeding
# - nbr_seeds 15.
my_singularity_img='../tractoflow_*.img' # or .sif
nextflow -c ../beluga.conf run ../tractoflow-*/main.nf --root ../input_data_tractoflow \
-with-singularity $my_singularity_img -resume -with-report report.html \
nextflow -c ../beluga.conf run ../tractoflow-*/main.nf --input ../input_data_tractoflow \
-with-singularity ../tractoflow_*.img -resume -with-report report.html \
--dti_shells "0 1500" --fodf_shells "0 1500" --step 0.5 --nbr_seeds 15 \
--wm_seeding false --mean_frf false --set_frf true

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