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docs: fix outdated YAML example links#473

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linbo328 wants to merge 1 commit into
sanger-tol:mainfrom
linbo328:fix/docs-outdated-yaml-links
Closed

docs: fix outdated YAML example links#473
linbo328 wants to merge 1 commit into
sanger-tol:mainfrom
linbo328:fix/docs-outdated-yaml-links

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@linbo328
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Summary

Fixes #471

The documentation referenced YAML example files that no longer exist:

Changes

  1. Line 203: Updated link from broken https://raw.githubusercontent.com/.../nxOscDF5033.yaml to working relative path ../assets/local_testing/nxOscDF5033-BGA.yaml

  2. Line 318: Updated [nxOscDF5033.yaml](../assets/local_testing/nxOscDF5033.yaml) to [nxOscDF5033-BGA.yaml](../assets/local_testing/nxOscDF5033-BGA.yaml)

Why

The actual file in the repository is nxOscDF5033-BGA.yaml, not nxOscDF5033.yaml. The old links returned 404 errors.


Generated with Auto Bounty Hunter.

- Update nxOscDF5033.yaml to nxOscDF5033-BGA.yaml (actual filename)
- Replace broken raw.githubusercontent.com link with relative path
- Fixes documentation issue where example YAML file was not found

Fixes sanger-tol#471
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github-actions Bot commented May 13, 2026

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.5.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@DLBPointon
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Contributor

Please don't solely use AI for PR's.

This has already been fixed as part of #472

@DLBPointon DLBPointon closed this May 13, 2026
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Usage yaml documentation outdated

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