update install samtools

samtools · Dec 17, 2024 · 4f263fb · 4f263fb
1 parent e6c7a8f
commit 4f263fb
Showing 1 changed file with 10 additions and 3 deletions.
diff --git a/scripts/install-samtools.sh b/scripts/install-samtools.sh
@@ -1,5 +1,12 @@
 #!/bin/sh
 set -ex
-wget https://github.com/samtools/samtools/releases/download/1.19.1/samtools-1.19.1.tar.bz2
-tar -xjvf samtools-1.19.1.tar.bz2
-cd samtools-1.19.1 && ./configure --prefix=/usr && make && sudo make install
+#ubuntu specific
+sudo apt-get update
+sudo apt-get upgrade
+sudo apt-get install -y libncurses-dev libbz2-dev liblzma-dev
+
+#install from the github tar
+export SAMTOOLS_VERSION=1.19.1
+wget https://github.com/samtools/samtools/releases/download/${SAMTOOLS_VERSION}/samtools-${SAMTOOLS_VERSION}.tar.bz2
+tar -xjvf samtools-${SAMTOOLS_VERSION}.tar.bz2
+cd samtools-{SAMTOOLS_VERSION} && ./configure --prefix=/usr && make && sudo make install