fix: scenarios sometimes listed as in progress after bmj completes

[james-rl]

Description

• Refactored the progress bar to sit in a common location
• Perform a final round of reconciliation after bmj completes to avoid listing some scenarios as being stuck in "in progress" even though they already finished running.

Type of Change

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• Documentation update
• Code refactoring
• Performance improvement
• Test updates

Related Issues

Closes #

Changes Made

Testing

• I have tested locally (but this is hard to reproduce)
• I have added/updated tests
• All existing tests pass

Checklist

• My code follows the code style of this project
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have updated the documentation accordingly
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes
• Any dependent changes have been merged and published

Screenshots (if applicable)

Additional Notes