Bump up version number for GHA. #58
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python package | ||
| on: [push, pull_request] | ||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| max-parallel: 4 | ||
| matrix: | ||
| python-version: [3.7, 3.8, 3.9, "3.10"] | ||
| r-version: ['release'] | ||
| os: [ubuntu-latest, macOS-latest] | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Set up R ${{ matrix.config.r }} | ||
| uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
| - name: Install dependencies | ||
| run: | | ||
| sudo apt-get update | ||
| python -m pip install --upgrade pip | ||
| - name: Lint with flake8 | ||
| run: | | ||
| pip install flake8 | ||
| ./run_linting.sh | ||
| - name: Install Python dependencies | ||
| run: | | ||
| pip install flake8 pytest codecov pytest-cov | ||
| pip install ipython scipy | ||
| pip install rpy2 | ||
| - name: Install R dependencies | ||
| run: | | ||
| Rscript -e 'install.packages(c("dplyr", "ggplot2", "tidyr"))' | ||
| - name: Install package | ||
| run: | | ||
| pip install . | ||
| - name: Test with pytest | ||
| run: | | ||
| export LD_LIBRARY_PATH=$(python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH} | ||
| pip install pytest codecov pytest-cov ipython | ||
| ./run_tests.sh | ||
