pythonScripts

Handy Python scripts for neuroimaging

• afq.py streamline visualization
• lut2json.py : convert scientific colormaps (e.g. batlow) for use with NiiVue.
• npz2nii.py: extract images from npz file and save as NIfTI. Optionally nearest neighbor down sample.
• npz2niiModalSlow.py: extract images from npz file and save as NIfTI. Optionally apply slow modal down sample.
• npzinfo.py: report contents of npz file.
• npz2npz.py: convert npz images to npz applying a nearest neighbor down sample.
• thermal2json.py convert matplotlib thermal colormap for use with NiiVue.
• tiff2nii.py rescales a TIFF volume to match a NIfTI image and saves the resulting image as a NIfTI volume.