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rnnh · Apr 3, 2020 · 57dd806 · 57dd806
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diff --git a/README.md b/README.md
@@ -36,8 +36,10 @@ If you have any suggestions, or questions, or spot any mistakes, [please let me
 
 ### [2. Program guides](docs/part2.md)
 
+- [bowtie](docs/bowtie.md)
 - [bowtie2](docs/bowtie2.md)
 - [conda](docs/conda.md)
+- [fasterq-dump](docs/fasterq-dump.md)
 - [fastq-dump](docs/fastq-dump.md)
 - [featureCounts](docs/featureCounts.md)
 - [htseq-count](docs/htseq-count.md)

diff --git a/docs/bowtie.md b/docs/bowtie.md
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+---
+layout: default
+title: bowtie
+parent: 2. Program guides
+---
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 # bowtie
 
 `bowtie` can be used to:

diff --git a/docs/fasterq-dump.md b/docs/fasterq-dump.md
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+---
+layout: default
+title: fasterq-dump
+parent: 2. Program guides
+---
+
 # fasterq-dump
 
 `fasterq-dump` is a tool for downloading sequencing reads from [NCBI's Sequence Read Archive (SRA)](https://www.ncbi.nlm.nih.gov/sra).