Network and machine learning analyses of estuarine microbial communities along a freshwater-marine mixed gradient

This repository contains scripts used to process and analyse the data and to reproduce the figures using 16S and 18S rRNA amplicon sequencing data for our paper:

Paper: Network and machine learning analyses of estuarine microbial communities along a freshwater-marine mixed gradient

Scripts

The following folders contain scripts for data analysis and figures.

• scripts contains all scripts to reproduce the analyses and figures (main and supplements).

• data contains the processed data used in this paper (otu and taxa tables, meta data, shapefile).

Data availability

Raw sequence reads and metadata have been submitted to the NCBI Sequence Read Archive under bioproject PRJNA554530.