I am a Genetic Counseling Assistant at GeneDx bridging the gap between clinical operations and computational biology. I develop tools to automate genomic data parsing and clinical phenotyping to support high-throughput NGS workflows.
- DNA Sequence Parser: Python utility for processing FASTA files; automates GC content calculations and sequence metric QC.
- HPO Data Mapper: NLP-based tool mapping unstructured clinical notes to Human Phenotype Ontology (HPO) terms for standardized diagnostics.
- Genomic Annotation Pipeline: A command-line driven workflow for functional genome annotation. Focuses on data interoperability, GFF3 manipulation using Biocode, and executing production-level pipelines.
| Category | Tools & Technologies |
|---|---|
| Programming | Python (Biopython, Pandas), Bash/Linux, SQL (MySQL/MariaDB) |
| Genomics | NGS/TGS Platforms, BLAST, ClinVar, HPO, Entrez |
| Workflow | Git/GitHub, Docker, Nextflow, WSL |
| Clinical Ops | High-volume diagnostic laboratory workflows, LIMS |
- M.S. Bioinformatics | University of Maryland Global Campus (Incoming May 2026)
- Specialized Certificate in Bioinformatics | UC San Diego (Completed 2026)
- Core Competencies: Relational database modeling, NIX command line, and NGS/Third-Gen sequencing mechanisms (Cancer Genomics, RNA-Seq, Epigenetics).
- Current Upskilling: Master’s-level pipeline orchestration with Nextflow and genomic data architecture on AWS.
- LinkedIn: Your Profile Name
- GitHub: Check out my
bioinformatics_projectsfolder above for source code.