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23 Open 4 Closed
23 Open 4 Closed
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Issues list

segmentation fault
#29 opened Oct 24, 2023 by lmanchon
calc_window_mappability.py
#28 opened Oct 23, 2023 by lmanchon
SVD from matrix
#27 opened Mar 14, 2021 by YeCheng57
SVD Software no longer available
#25 opened Jan 1, 2021 by ricardoharripaul
5
ERROR: coverage file and models file must be for exactly the same set of genomic windows
#24 opened Dec 15, 2020 by tpjones15
1
Nearest neighbours
#23 opened Feb 11, 2020 by katherinef
Error executing CLAMMS: ERROR: more than 4096 CNVs detected!
#22 opened Feb 3, 2020 by lakhujanivijay
2
Mappability file for hg38
#21 opened Jan 31, 2020 by katherinef
2
Gender information is optional - will omitting that make any difference?
#20 opened Dec 16, 2019 by lakhujanivijay
Which file is the sample.cnv.txt file used by plot_cnv.sh script?
#19 opened Nov 29, 2019 by lakhujanivijay
What file from the GATK DepthOfCoverage should be input to gatk_coverage_to_bed?
#18 opened Oct 11, 2019 by lakhujanivijay
1
command gatk_coverage_to_bed is missing from CLAMMS installation directory
#17 opened Oct 10, 2019 by lakhujanivijay
1
Problem with export command on the CLAMMS documentation page
#16 opened Oct 9, 2019 by lakhujanivijay
creating QCs metrics file
#15 opened Jun 6, 2018 by thedam
2
Running sam_gatk_coverage_to_bed on gatk DOC files
#14 opened May 10, 2018 by si3
calc_window_mappability.py line 69 syntax error
#13 opened Mar 15, 2018 by AlexGreiner
1
plotting fails
#10 opened Sep 29, 2017 by inijman
3
TypeError: 'NonType object has no attribute '__getitem__'
#8 opened Jun 29, 2017 by stefandiederich
2
call_cnv output .cnv.bed is empty
#6 opened Mar 31, 2017 by yingchen69
6
Memory errors while running 'call_cnv'
#5 opened Mar 6, 2017 by vijaymp38
4
The windows.bed is empty
#4 opened Nov 23, 2016 by jacobhsu35
1
nan in created model.bed?
#3 opened May 11, 2016 by JMF47
1
mappability 150bp reads
#2 opened May 4, 2016 by wdecoster
1
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