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2025.02 #3460

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Feb 24, 2025
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2025.02 #3460

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7e82899
2025.02
antgonza Feb 23, 2025
c63351b
update CHANGELOG.md
antgonza Feb 23, 2025
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16 changes: 16 additions & 0 deletions CHANGELOG.md
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# Qiita changelog

Version 2025.02
---------------

Deployed on February 24th, 2025

* Replaced os.rename for shutil.move in the code to fix [#3455](https://github.com/qiita-spots/qiita/issues/3455).
* Via qp-spades, replaced the legacy `spades` command for `cloudSPAdes` for TellSeq.
* `FASTA_preprocessed` within qtp-sequencing now allows for results to be named using their sample-name, extra from run-prefix.
* `Remove SynDNA inserts & plasmid reads` superseded `Remove SynDNA reads`, which now removes SynDna inserts and plasmids.
* `update_resource_allocation_redis` now relies on using equations stored in the database vs. hardcoded; thank you @Gossty!
* SPP: Updated prep-info file generation to identify and report filtered fastq files that could not be matched to a sample-id instead of silently ignoring them.
* SPP: Removed legacy test code and example files for amplicon processing. Some other tests updated and repurposed.
* SPP: jobs are now easier to restart.
* SPP: MultiQC report generation is now a separate slurm job & use jinja2 templates; also FastQC use jinja2 templates.


Version 2025.01
---------------

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2 changes: 1 addition & 1 deletion qiita_core/__init__.py
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# The full license is in the file LICENSE, distributed with this software.
# -----------------------------------------------------------------------------

__version__ = "2025.01"
__version__ = "2025.02"
2 changes: 1 addition & 1 deletion qiita_db/__init__.py
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from . import user
from . import processing_job

__version__ = "2025.01"
__version__ = "2025.02"

__all__ = ["analysis", "artifact", "archive", "base", "commands",
"environment_manager", "exceptions", "investigation", "logger",
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2 changes: 1 addition & 1 deletion qiita_pet/__init__.py
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# The full license is in the file LICENSE, distributed with this software.
# -----------------------------------------------------------------------------

__version__ = "2025.01"
__version__ = "2025.02"
2 changes: 1 addition & 1 deletion qiita_pet/handlers/api_proxy/__init__.py
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from .user import (user_jobs_get_req)
from .util import check_access, check_fp

__version__ = "2025.01"
__version__ = "2025.02"

__all__ = ['prep_template_summary_get_req', 'data_types_get_req',
'study_get_req', 'sample_template_filepaths_get_req',
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2 changes: 1 addition & 1 deletion qiita_ware/__init__.py
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# The full license is in the file LICENSE, distributed with this software.
# -----------------------------------------------------------------------------

__version__ = "2025.01"
__version__ = "2025.02"
2 changes: 1 addition & 1 deletion setup.py
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from setuptools import setup
from glob import glob

__version__ = "2025.01"
__version__ = "2025.02"


classes = """
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