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qalid7 · May 12, 2020 · 982006e · 982006e
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commit 982006e
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Showing 18 changed files with 13 additions and 460,455 deletions.
diff --git a/cell_class/CellClassification.sh b/cell_class/CellClassification.sh
diff --git a/cell_class/header_cell_classification b/cell_class/header_cell_classification
diff --git a/cell_class/header_cell_classification_davros b/cell_class/header_cell_classification_davros
diff --git a/cell_class/parameters-classification.txt b/cell_class/parameters-classification.txt
@@ -1,9 +1,9 @@
-exp_dir /mnt/scratch/users/molecpath/sraza/scripts/MyCodes/TracerX/classification/20171019-SCCNNClassifier/ExpDir-HE-4class
-results_dir /mnt/scratch/DMP/COPAINGE/tracerx/John_Variable_thickness/results/classification
+exp_dir ~/ExpDir-HE-4class
+results_dir /classification
 file_name_pattern *.ndpi
-date 20171129
+date xxxx
 in_feat_dim 3
-detection_results_path /mnt/scratch/DMP/COPAINGE/tracerx/John_Variable_thickness/results/detection/20171128
-tissue_segment_dir /mnt/scratch/DMP/COPAINGE/tracerx/John_Variable_thickness/results/tissue_segmentation/20171031
+detection_results_path xxxx
+tissue_segment_dir xxxx
 num_of_classes 4
 color_code_file HE_Fib_Lym_Tum_Others.csv
diff --git a/cell_detect/CellDetect.sh b/cell_detect/CellDetect.sh
diff --git a/cell_detect/Train_180108.bsub b/cell_detect/Train_180108.bsub
diff --git a/cell_detect/header_cell_detection b/cell_detect/header_cell_detection
diff --git a/cell_detect/header_cell_detection_davros b/cell_detect/header_cell_detection_davros
diff --git a/cell_detect/parameters-detection.txt b/cell_detect/parameters-detection.txt
@@ -1,7 +1,7 @@
-results_dir /mnt/scratch/DMP/COPAINGE/tracerx/John_Variable_thickness/results/detection
+results_dir ~/detection
 file_name_pattern *.ndpi
-date 20171128
+date 
 in_feat_dim 4
-exp_dir /mnt/scratch/users/molecpath/sraza/scripts/MyCodes/TracerX/detection/20171013SCCNN_detection/ExpDir-HE
-tissue_segment_dir /mnt/scratch/DMP/COPAINGE/tracerx/John_Variable_thickness/results/tissue_segmentation/20171031
-preprocessed_dir /mnt/scratch/DMP/COPAINGE/tracerx/John_Variable_thickness/results/detection/20171128
+exp_dir ~/ExpDir-HE
+tissue_segment_dir xxx
+preprocessed_dir xxx
diff --git a/tissue_seg/Test.errors.961045 b/tissue_seg/Test.errors.961045
diff --git a/tissue_seg/Test.errors.984215 b/tissue_seg/Test.errors.984215