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pieetie / svforge Public

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Release v1.0.0 (#1)#2

Merged

pieetie merged 31 commits into

mainpieetie/svforge:mainfrom

devpieetie/svforge:devCopy head branch name to clipboard

Apr 25, 2026

Conversation Commits31 (31)Checks Files changed

Merged

Release v1.0.0 (#1)#2
pieetie merged 31 commits into
mainfrom
dev

Commits

Commits on Apr 23, 2026

init gitignore
pieetie
committed
update gitignore
pieetie
committed
chore: svforge metadata and packaging
pieetie
committed
feat: import core SV sampling engine
pieetie
committed
feat: import VCF writers and caller plugins
pieetie
committed
feat: import validation and overlap tooling
pieetie
committed
data: add banks and header templates
pieetie
committed
feat: CLI and console scripte
pieetie
committed
feat: add I/O layer for VCF, gzip, and BCF
pieetie
committed

Commits on Apr 24, 2026

feat: add gnomAD and blacklist injection catalogs
pieetie
committed
feat: sample SV injections from bundled catalogs
pieetie
committed
feat: add CLI flags for gnomAD and blacklist injection
pieetie
committed
chore: align Manta/Delly writers and header templates
pieetie
committed
refactor: streamline annotate and remove unused validate modules
pieetie
committed
test: add tests
pieetie
committed
fix: ruff fixes
pieetie
committed
update gitignore
pieetie
committed
chore: add data_local README and gen-test for dev setup
pieetie
committed
docs: add brand assets and usage notice
pieetie
committed
docs: add ready-to-use command sheet
pieetie
committed

Commits on Apr 25, 2026

docs: update README
pieetie
committed
docs: fix logo color toggle
pieetie
committed
docs: fix logo width
pieetie
committed
docs: fix logo width (450)
pieetie
committed
docs: add contributing
pieetie
committed
docs: fix contributing
pieetie
committed
docs: add CHANGELOG
pieetie
committed
ci: update CI and publish workflows
pieetie
committed
ci: harden release process
pieetie
committed
docs: fix README license icon
pieetie
committed
docs: document bcftools sort+index workaround
pieetie
committed

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