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@pharmbio

pharmb.io

Pharmaceutical Bioinformatics research group at Uppsala University

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  1. sciluigi sciluigi Public

    A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular

    Python 335 57

  2. bioimg-sciluigi-casestudy bioimg-sciluigi-casestudy Public

    An automated virtual machine setup, containing a use case for running workflows written in SciLuigi

    Python 5 1

  3. robotlab robotlab Public

    Cell painting and imaging with robots

    Python 12 1

  4. plaid plaid Public

    PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.

    Jupyter Notebook 14 4

  5. squid squid Public

    Forked from Cephla-Lab/Squid

    C 2

Repositories

Showing 10 of 110 repositories
  • imagedb Public

    Image database for pharmbio microscope images

    pharmbio/imagedb’s past year of commit activity
    JavaScript 5 1 9 3 Updated Feb 12, 2025
  • pipelinegui Public
    pharmbio/pipelinegui’s past year of commit activity
    JavaScript 0 0 1 0 Updated Feb 10, 2025
  • plaid Public

    PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.

    pharmbio/plaid’s past year of commit activity
    Jupyter Notebook 14 4 0 2 Updated Feb 5, 2025
  • colopaint3D Public

    Supporting scripts and code for Cell Painting in 3D spheroids

    pharmbio/colopaint3D’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 4, 2025
  • lmu-student Public

    Deep Learning Notebooks adapted for some of our courses by David Holmberg - including PB_SEQ, ULLA, Ai4DD etc

    pharmbio/lmu-student’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 3, 2025
  • lmm-student Public

    Deep Learning Notebooks adapted for some of our courses by David Holmberg - including PB_SEQ, ULLA, Ai4DD etc

    pharmbio/lmm-student’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 3, 2025
  • pharmbio-web Public

    The Static (Hugo) website for pharmb.io

    pharmbio/pharmbio-web’s past year of commit activity
    JavaScript 3 8 0 4 Updated Jan 29, 2025
  • sc_celldeath Public

    Analysis scripts for single-cell celldeath publication

    pharmbio/sc_celldeath’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 23, 2025
  • squid Public Forked from Cephla-Lab/Squid
    pharmbio/squid’s past year of commit activity
    C 2 39 6 0 Updated Jan 21, 2025
  • cp_pipeline Public
    pharmbio/cp_pipeline’s past year of commit activity
    Python 0 0 0 0 Updated Jan 20, 2025
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