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415 visit logic unit tests #424

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add 1.0.0 cran release link, latest version and news
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Bodach, Sara {MDBB~South San Francisco} committed Sep 11, 2024
commit b05b34ca05611d105777fb4653e7de1df612fab9
2 changes: 1 addition & 1 deletion DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: sdtmchecks
Title: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets
Version: 1.0.0
Version: 1.0.0.9001
Authors@R: c(
person(given="Will",
family="Harris",
14 changes: 11 additions & 3 deletions NEWS.md
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@@ -1,20 +1,28 @@
# sdtmchecks 1.0.0.9001 "CRAN Try"


## Refinements of existing data check functions
* Add more logic to check missing visit post-subsetting the dataframe:
[`check_lb_lbdtc_visit_ordinal_error`](https://pharmaverse.github.io/sdtmchecks/reference/check_lb_lbdtc_visit_ordinal_error.html), [`check_rs_rsdtc_visit_ordinal_error`](https://pharmaverse.github.io/sdtmchecks/reference/check_rs_rsdtc_visit_ordinal_error.html), [`check_tr_trdtc_visit_ordinal_error`](https://pharmaverse.github.io/sdtmchecks/reference/check_tr_trdtc_visit_ordinal_error.html), [`check_tu_tudtc_visit_ordinal_error`](https://pharmaverse.github.io/sdtmchecks/reference/check_tu_tudtc_visit_ordinal_error.html)


# sdtmchecks 1.0.0 "CRAN Try"


## Refinements of existing data check functions

* Covid related checks have been updated to expect a character vector of terms identifying covid related AEs. Specifically [`check_ae_aeacn_ds_disctx_covid`](https://pharmaverse.github.io/sdtmchecks/reference/check_ae_aeacn_ds_disctx_covid.html), [`check_ae_aeacnoth_ds_stddisc_covid`](https://pharmaverse.github.io/sdtmchecks/reference/check_ae_aeacnoth_ds_stddisc_covid.html), [`check_dv_ae_aedecod_covid`](https://pharmaverse.github.io/sdtmchecks/reference/check_dv_ae_aedecod_covid.html) are affected.
* Covid-19 related checks have been updated to expect a character vector of terms identifying Covid related AEs. Specifically [`check_ae_aeacn_ds_disctx_covid`](https://pharmaverse.github.io/sdtmchecks/reference/check_ae_aeacn_ds_disctx_covid.html), [`check_ae_aeacnoth_ds_stddisc_covid`](https://pharmaverse.github.io/sdtmchecks/reference/check_ae_aeacnoth_ds_stddisc_covid.html), [`check_dv_ae_aedecod_covid`](https://pharmaverse.github.io/sdtmchecks/reference/check_dv_ae_aedecod_covid.html) are affected.
* [`check_vs_height`](https://pharmaverse.github.io/sdtmchecks/reference/check_vs_height.html) minor update to return message [#379](https://github.com/pharmaverse/sdtmchecks/issues/379)
* [`check_lb_missing_month`](https://pharmaverse.github.io/sdtmchecks/reference/check_lb_missing_month.html) and [`check_mh_missing_month`](https://pharmaverse.github.io/sdtmchecks/reference/check_mh_missing_month.html) were both updated to have flexibility for Roche functions parsing `--SPID`

## Misc package updates

* General updates for CRAN compliance, e.g. to DESCRIPTION file, Roxygen headers, etc.
* Remove `rm(list=ls())` from sdtmchecksmeta.R ([#375](https://github.com/pharmaverse/sdtmchecks/issues/375))
* Removed `xls2list()` function. If working with the results of `run_all_checks()` it's recommended to output results to to .rds instead of parsing .xlsx files.
* Removed `xls2list()` function. If working with the results of `run_all_checks()` it's recommended to output results to .rds instead of parsing .xlsx files.


# sdtmchecks 0.1.11.9008 "Light Ice"
# sdtmchecks 0.1.12 "Light Ice"


## Refinements of existing data check functions
6 changes: 4 additions & 2 deletions _pkgdown.yml
Original file line number Diff line number Diff line change
@@ -69,7 +69,7 @@ reference:
# - convert_var_to_ascii
# - truncate_var_strings
# - create_R_script
# - xlsx2list
# - xlsx2list (no longer in the package)

- title: "Company-specific utility functions"
desc: Helper functions for data checks tailored to company-specific data inputs.
@@ -79,8 +79,10 @@ reference:

news:
releases:
- text: "sdtmchecks 1.0.0"
href: news/index.html#sdtmchecks-100-cran-try
- text: "sdtmchecks 0.1.12"
href: news/index.html#sdtmchecks-0112-cran-try
href: news/index.html#sdtmchecks-0112-light-ice
- text: "sdtmchecks 0.1.11"
href: news/index.html#sdtmchecks-0111-light-ice
- text: "sdtmchecks 0.1.10"