chore: restored spellcheck #161
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| # Source: https://github.com/pharmaverse/admiralci | |
| # Stripped down version of admiralci checks. Good for | |
| # the developement process. When package is ready to | |
| # be published, revisit and add release-related | |
| # workflows. | |
| name: admiral CI/CD Wortkflows | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| concurrency: | |
| group: admiral-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| R_VERSION: "release" | |
| jobs: | |
| get_r_version: | |
| name: Get R version | |
| runs-on: ubuntu-latest | |
| outputs: | |
| r-version: ${{ steps.get_r_version.outputs.R_VERSION }} | |
| steps: | |
| - name: Get R Version for Downstream Container Jobs | |
| id: get_r_version | |
| run: echo "R_VERSION=$R_VERSION" >> $GITHUB_OUTPUT | |
| shell: bash | |
| spellcheck: | |
| name: Spelling | |
| runs-on: ubuntu-latest | |
| needs: get_r_version | |
| container: | |
| image: "ghcr.io/pharmaverse/admiralci-${{ needs.get_r_version.outputs.r-version }}:latest" | |
| steps: | |
| - name: Get branch names | |
| id: branch-name | |
| uses: tj-actions/branch-names@v8 | |
| - name: Checkout repo | |
| uses: actions/[email protected] | |
| if: github.event_name == 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - name: Checkout repository | |
| uses: actions/[email protected] | |
| if: github.event_name != 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| - name: Restore cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.staged.dependencies | |
| key: staged-deps | |
| - name: Run Staged dependencies | |
| uses: insightsengineering/staged-dependencies-action@v1 | |
| with: | |
| run-system-dependencies: true | |
| renv-restore: false | |
| enable-check: false | |
| direction: upstream | |
| git-ref: ${{ steps.branch-name.outputs.current_branch }} | |
| - name: Run Spellcheck | |
| uses: insightsengineering/r-spellcheck-action@v3 | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-latest | |
| needs: get_r_version | |
| container: | |
| image: "ghcr.io/pharmaverse/admiralci-${{ needs.get_r_version.outputs.r-version }}:latest" | |
| steps: | |
| - name: Get branch names | |
| id: branch-name | |
| uses: tj-actions/branch-names@v8 | |
| - name: Checkout repo | |
| uses: actions/[email protected] | |
| if: github.event_name == 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - name: Checkout repository | |
| uses: actions/[email protected] | |
| if: github.event_name != 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| - name: Restore cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.staged.dependencies | |
| key: staged-deps | |
| - name: Run Staged dependencies | |
| uses: insightsengineering/staged-dependencies-action@v1 | |
| with: | |
| run-system-dependencies: true | |
| renv-restore: false | |
| enable-check: false | |
| direction: upstream | |
| git-ref: ${{ steps.branch-name.outputs.current_branch }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install latest release of lintr | |
| run: | | |
| install.packages("lintr", repos = "https://packagemanager.posit.co/cran/latest/") | |
| shell: Rscript {0} | |
| - name: Lint | |
| run: | | |
| lints <- lintr::lint_package() | |
| if (length(lints) > 0L) { | |
| print(lints) | |
| stop("Lints detected. Please review and adjust code according to the comments provided.", call. = FALSE) | |
| } | |
| shell: Rscript {0} |