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Binary file modified R/sysdata.rda
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22 changes: 18 additions & 4 deletions R/utils_insert_db.R
Original file line number Diff line number Diff line change
Expand Up @@ -63,6 +63,9 @@ insert_pkg_info_to_db <- function(pkg_name, pkg_version,
# pkg_name <- "dplyr" # testing
if (isTRUE(getOption("shiny.testmode")))
pkg_info <- test_pkg_info[[pkg_name]]
else if (identical(Sys.getenv("GOLEM_CONFIG_ACTIVE"), "demo") &&
(pkg_name %in% demo_pkg_lst))
pkg_info <- demo_pkg_info[[pkg_name]]
else if (identical(Sys.getenv("TESTTHAT"), "true"))
pkg_info <- get_latest_pkg_info(pkg_name)
else
Expand Down Expand Up @@ -154,7 +157,11 @@ upload_package_to_db <- function(name, version, title, description,
insert_riskmetric_to_db <- function(pkg_name, pkg_version = "",
db_name = golem::get_golem_options('assessment_db_name')){

if (!isTRUE(getOption("shiny.testmode"))) {
if (identical(Sys.getenv("GOLEM_CONFIG_ACTIVE"), "demo") &&
(pkg_name %in% demo_pkg_lst)) {
riskmetric_assess <-
demo_pkg_assess[[pkg_name]]
} else if (!isTRUE(getOption("shiny.testmode"))) {
riskmetric_assess <-
riskmetric::pkg_ref(pkg_name,
source = "pkg_cran_remote") %>%
Expand Down Expand Up @@ -296,7 +303,10 @@ insert_riskmetric_to_db <- function(pkg_name, pkg_version = "",
insert_community_metrics_to_db <- function(pkg_name,
db_name = golem::get_golem_options('assessment_db_name')) {

if (!isTRUE(getOption("shiny.testmode")))
if (identical(Sys.getenv("GOLEM_CONFIG_ACTIVE"), "demo") &&
(pkg_name %in% demo_pkg_lst))
pkgs_cum_metrics <- demo_pkg_cum[[pkg_name]]
else if (!isTRUE(getOption("shiny.testmode")))
pkgs_cum_metrics <- generate_comm_data(pkg_name)
else
pkgs_cum_metrics <- test_pkg_cum[[pkg_name]]
Expand Down Expand Up @@ -394,7 +404,10 @@ upload_pkg_lst <- function(pkg_lst, assess_db, repos, repo_pkgs, user_name = "sy
updateProgress(1, glue::glue("{uploaded_packages$package[i]}"))

if (grepl("^[[:alpha:]][[:alnum:].]*[[:alnum:]]$", uploaded_packages$package[i])) {
if (!isTRUE(getOption("shiny.testmode")))
if (identical(Sys.getenv("GOLEM_CONFIG_ACTIVE"), "demo") &&
(uploaded_packages$package[i] %in% demo_pkg_lst))
ref <- demo_pkg_refs[[uploaded_packages$package[i]]]
else if (!isTRUE(getOption("shiny.testmode")))
ref <- riskmetric::pkg_ref(uploaded_packages$package[i],
source = "pkg_cran_remote")
else
Expand Down Expand Up @@ -449,7 +462,8 @@ upload_pkg_lst <- function(pkg_lst, assess_db, repos, repo_pkgs, user_name = "sy
if (is.function(updateProgress))
updateProgress(1)

if (!isTRUE(getOption("shiny.testmode"))) {
if (!isTRUE(getOption("shiny.testmode")) &&
(!identical(Sys.getenv("GOLEM_CONFIG_ACTIVE"), "demo") || !ref$name %in% demo_pkg_lst)) {
dwn_ld <- try(utils::download.file(ref$tarball_url, file.path("tarballs", basename(ref$tarball_url)),
quiet = TRUE, mode = "wb"),
silent = TRUE)
Expand Down
37 changes: 37 additions & 0 deletions data-raw/internal-data.R
Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,16 @@ template <- read.csv(file.path('data-raw', 'upload_format.csv'), stringsAsFacto

test_pkg_lst <- c("dplyr", "tidyr", "readr", "purrr", "tibble", "stringr", "forcats")

demo_package_tbl <-
RSQLite::SQLite() |>
DBI::dbConnect("demo_database.sqlite") |>
dplyr::tbl("package")

demo_pkg_lst <-
demo_package_tbl |>
dplyr::pull(name) |>
sort()

library(magrittr)
test_pkg_refs_compl <-
test_pkg_lst %>%
Expand All @@ -67,23 +77,49 @@ test_pkg_refs <-
test_pkg_refs_compl %>%
purrr::map(~ .x[c("name", "version", "source")] %>% purrr::set_names(c("name", "version", "source")))

demo_pkg_refs <-
demo_pkg_lst |>
purrr::map(\(x) demo_package_tbl |>
dplyr::filter(name == x) |>
dplyr::mutate(source = "pkg_cran_remote") |>
dplyr::select(name, version, source) |>
as.data.frame() |>
as.list()) |>
purrr::set_names(demo_pkg_lst)

devtools::load_all()
test_pkg_info <-
test_pkg_lst %>%
purrr::map(get_latest_pkg_info) %>%
purrr::set_names(test_pkg_lst)

demo_pkg_info <-
demo_pkg_lst |>
purrr::map(\(x) get_pkg_info(x, "demo_database.sqlite") |>
dplyr::select(Version=version, Maintainer=maintainer, Author=author, License=license, Published=published_on, Title=title, Description=description)) |>
purrr::set_names(demo_pkg_lst)

test_pkg_assess <-
test_pkg_refs_compl %>%
purrr::map( ~ .x %>%
dplyr::as_tibble() %>%
riskmetric::pkg_assess())

demo_pkg_assess <-
demo_pkg_lst |>
purrr::map(\(x) get_assess_blob(x, "demo_database.sqlite")) |>
purrr::set_names(demo_pkg_lst)

test_pkg_cum <-
test_pkg_lst %>%
purrr::map(generate_comm_data) %>%
purrr::set_names(test_pkg_lst)

demo_pkg_cum <-
demo_pkg_lst |>
purrr::map(\(x) get_comm_data(x, "demo_database.sqlite")) |>
purrr::set_names(demo_pkg_lst)

# New light palette, verified as color-blind friendly here:
# https://davidmathlogic.com/colorblind/#%239CFF94-%23B3FF87-%23BCFF43-%23D8F244-%23F2E24B-%23FFD070-%23FFBE82-%23FFA87C-%23FF8F6C-%23FF765B
# code:
Expand Down Expand Up @@ -154,5 +190,6 @@ usethis::use_data(
test_pkg_lst, test_pkg_refs, test_pkg_info, test_pkg_assess, test_pkg_cum,
color_palette, used_privileges, metric_lst, rpt_choices,
team_info_df,
demo_pkg_lst, demo_pkg_refs, demo_pkg_info, demo_pkg_assess, demo_pkg_cum,
internal = TRUE, overwrite = TRUE)

11 changes: 11 additions & 0 deletions inst/db-config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -75,6 +75,7 @@ example2:
- GxP Compliant
- Needs Review
- Not GxP Compliant
- Something
noncredentialed:
use_shinymanager: false
assessment_db: database_noncredentialed.sqlite
Expand All @@ -83,3 +84,13 @@ noncredentialed:
- default
privileges:
default: [admin, weight_adjust, auto_decision_adjust, final_decision, revert_decision, add_package, delete_package, overall_comment, general_comment]
demo_database:
assessment_db: demo_database.sqlite
decisions:
categories:
- Approved
- Low Risk
- Needs Review
- High Risk
demo:
inherits: demo_database