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Cleaned 18S database to make sure all sequences are of the same lengt… Python application #61: Commit a1e1e6d pushed by kbessonov1984
July 16, 2025 18:06 5m 17s v1.5.0
v1.5.0
July 16, 2025 18:06 5m 17s
Now in 18S we use full length of the aligned clustalW sequence and do… Python application #60: Commit 95ac2a7 pushed by kbessonov1984
July 16, 2025 16:03 4m 51s v1.5.0
v1.5.0
July 16, 2025 16:03 4m 51s
message error fix Python application #59: Commit 3b08257 pushed by kbessonov1984
July 15, 2025 19:39 21m 9s v1.5.0
v1.5.0
July 15, 2025 19:39 21m 9s
Fixed when -f and -r are specified but mode is a single direction suc… Python application #58: Commit 507f26d pushed by kbessonov1984
July 15, 2025 18:52 5m 4s v1.5.0
v1.5.0
July 15, 2025 18:52 5m 4s
Added better QC checkes for BLAST and also exclusive group for -f and… Python application #57: Commit 885044c pushed by kbessonov1984
July 15, 2025 17:49 1m 58s v1.5.0
v1.5.0
July 15, 2025 17:49 1m 58s
fixed mixed mode for 18S and improved contig formation from the mixed… Python application #56: Commit a58f9b8 pushed by kbessonov1984
July 10, 2025 19:35 5m 13s v1.5.0
v1.5.0
July 10, 2025 19:35 5m 13s
is_subject_reversed issue Python application #55: Commit 5fd4c45 pushed by kbessonov1984
July 8, 2025 20:56 5m 20s v1.5.0
v1.5.0
July 8, 2025 20:56 5m 20s
improved reliability of buildContig() 18S function when contig build … Python application #54: Commit 2971cbf pushed by kbessonov1984
July 8, 2025 20:52 5m 20s v1.5.0
v1.5.0
July 8, 2025 20:52 5m 20s
fixed the FASTA printing error Python application #53: Commit 5ad8feb pushed by kbessonov1984
July 4, 2025 21:37 5m 5s v1.5.0
v1.5.0
July 4, 2025 21:37 5m 5s
18S no blast error for contig with %id less than 93% was not giving a… Python application #52: Commit 179c0f9 pushed by kbessonov1984
July 4, 2025 20:53 5m 2s v1.5.0
v1.5.0
July 4, 2025 20:53 5m 2s
18S no blast error for contig with %id less than 93% was not giving a… Python application #51: Commit c65a8f1 pushed by kbessonov1984
July 4, 2025 20:51 5m 1s v1.5.0
v1.5.0
July 4, 2025 20:51 5m 1s
fixed contig 18S formation Python application #50: Commit 044500d pushed by kbessonov1984
July 4, 2025 20:28 5m 13s v1.5.0
v1.5.0
July 4, 2025 20:28 5m 13s
Fixed species ID in gp60 module in contig mode so that species is det… Python application #49: Commit b04b6e6 pushed by kbessonov1984
July 3, 2025 17:34 4m 48s v1.5.0
v1.5.0
July 3, 2025 17:34 4m 48s
Fixed gp60 contig building and also the file pairing Python application #48: Commit ebfd99e pushed by kbessonov1984
July 3, 2025 11:56 6m 15s v1.5.0
v1.5.0
July 3, 2025 11:56 6m 15s
added 26 new wild genotype 18S sequences including C.sp.duck|AF316630… Python application #47: Commit 0961424 pushed by kbessonov1984
June 6, 2025 20:16 5m 12s v1.5.0
v1.5.0
June 6, 2025 20:16 5m 12s
added automatic file pairing based on forward and reverse suffix spec… Python application #46: Commit 72629b4 pushed by kbessonov1984
June 2, 2025 20:21 4m 39s v1.5.0
v1.5.0
June 2, 2025 20:21 4m 39s
use 95th quantile to filter BLAST hits to remove high homology region… Python application #45: Commit ea8f7e7 pushed by kbessonov1984
May 28, 2025 19:24 4m 53s v1.5.0
v1.5.0
May 28, 2025 19:24 4m 53s
removed duplicates from blast_SSU.fa and blast_gp60.fasta Python application #44: Commit 412461d pushed by kbessonov1984
May 28, 2025 06:22 4m 43s v1.5.0
v1.5.0
May 28, 2025 06:22 4m 43s
Fixed BLAST results scoring and filtering using the 95th quantile Python application #43: Commit 2ca8281 pushed by kbessonov1984
May 28, 2025 04:16 4m 53s v1.5.0
v1.5.0
May 28, 2025 04:16 4m 53s
fixed average mean filtering now with mean-2SD for more relaxed cases Python application #42: Commit cbf1c42 pushed by kbessonov1984
May 27, 2025 21:28 4m 51s v1.5.0
v1.5.0
May 27, 2025 21:28 4m 51s
finished unit testing for 18S marker with 64 sequences Python application #41: Commit 6c93146 pushed by kbessonov1984
May 7, 2025 20:25 5m 9s v1.5.0
v1.5.0
May 7, 2025 20:25 5m 9s
fixed correct file reading with .fa extension. Updated 18S species un… Python application #40: Commit 9aef3d9 pushed by kbessonov1984
May 3, 2025 16:19 4m 52s v1.5.0
v1.5.0
May 3, 2025 16:19 4m 52s
contig formation in 18S is the more robust solution Python application #39: Commit d8fee3e pushed by kbessonov1984
April 16, 2025 20:26 4m 37s v1.5.0
v1.5.0
April 16, 2025 20:26 4m 37s
Improved contig building for 18S and improved BLAST sorting eliminati… Python application #38: Commit 03bf9be pushed by kbessonov1984
April 15, 2025 21:31 4m 42s v1.5.0
v1.5.0
April 15, 2025 21:31 4m 42s
Improved contig building for 18S and improved BLAST sorting eliminati… Python application #37: Commit a9e4735 pushed by kbessonov1984
April 15, 2025 20:16 5m 3s v1.5.0
v1.5.0
April 15, 2025 20:16 5m 3s