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@pfenninglab

Pfenning Lab

Genetic and Epigenetic data processing code from the Pfenning Lab at Carnegie Mellon University

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  1. halLiftover-postprocessing halLiftover-postprocessing Public

    Python 20 5

  2. TACIT TACIT Public

    OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit

    Shell 18 2

  3. OCROrthologPrediction OCROrthologPrediction Public

    This repository contains models and code for predicting open chromatin status of OCR orthologs.

    Shell 3

  4. addiction_gwas_enrichment addiction_gwas_enrichment Public

    Scripts and data generated for the addiction GWAS enrichment and subsequent analyses.

    HTML 2 1

  5. Logan_Striatum_snRNA-seq Logan_Striatum_snRNA-seq Public

    Single cell transcriptomics analyses in the striatum of patients with OUD

    HTML 2 1

  6. ml-prototypes ml-prototypes Public

    Jupyter Notebook 1

Repositories

Showing 10 of 24 repositories
  • sysMPRA Public

    This repository is for sysMPRA code.

    pfenninglab/sysMPRA’s past year of commit activity
    Python 0 0 0 0 Updated Apr 28, 2025
  • Macaque_Multiome_DLPFC Public

    Methods for analyzing monkey single cell multiomics datasets in the prefrontal cortex.

    pfenninglab/Macaque_Multiome_DLPFC’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 27, 2025
  • Logan_Striatum_snRNA-seq Public

    Single cell transcriptomics analyses in the striatum of patients with OUD

    pfenninglab/Logan_Striatum_snRNA-seq’s past year of commit activity
    HTML 2 MIT 1 0 0 Updated Apr 15, 2025
  • ad_variants Public
    pfenninglab/ad_variants’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 28, 2025
  • custom_ArchR_genomes_and_annotations Public

    R objects that contain custom ArchR genome annotations

    pfenninglab/custom_ArchR_genomes_and_annotations’s past year of commit activity
    Shell 1 GPL-3.0 0 1 0 Updated Mar 6, 2025
  • halLiftover-postprocessing Public
    pfenninglab/halLiftover-postprocessing’s past year of commit activity
    Python 20 5 4 0 Updated Mar 2, 2025
  • Pierce_transgen_rat_multiome Public

    Pierce lab rat nucleus accumbens single cell multiome analyses in transgenerational model of substance use predisposition

    pfenninglab/Pierce_transgen_rat_multiome’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 25, 2025
  • git-tutorial Public
    pfenninglab/git-tutorial’s past year of commit activity
    0 0 0 0 Updated Feb 11, 2025
  • StriatumComparativeGenomics Public

    Comparative integrative analyses of single cell datasets of the mammalian striatum

    pfenninglab/StriatumComparativeGenomics’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Nov 26, 2024
  • TACIT Public

    OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit

    pfenninglab/TACIT’s past year of commit activity
    Shell 18 2 0 0 Updated Sep 19, 2024
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