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@pangenome

pangenome

graphical pangenomic methods

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  1. pggb pggb Public

    the pangenome graph builder

    Shell 432 45

  2. odgi odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 210 42

  3. impg impg Public

    implicit pangenome graph

    Rust 59 5

  4. smoothxg smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 57 7

Repositories

Showing 10 of 63 repositories
  • pggb Public

    the pangenome graph builder

    pangenome/pggb’s past year of commit activity
    Shell 432 MIT 45 47 1 Updated May 19, 2025
  • manyfa Public

    bedtools getfasta / samtools faidx for pangenomes worth of FASTA files

    pangenome/manyfa’s past year of commit activity
    C++ 7 0 0 0 Updated May 15, 2025
  • MemPanG25 Public Forked from pangenome/MemPanG24

    Computational Pangenomics in Memphis

    pangenome/MemPanG25’s past year of commit activity
    HTML 1 MIT 2 0 0 Updated May 14, 2025
  • impg Public

    implicit pangenome graph

    pangenome/impg’s past year of commit activity
    Rust 59 MIT 5 3 3 Updated May 6, 2025
  • odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    pangenome/odgi’s past year of commit activity
    C++ 210 MIT 42 46 (1 issue needs help) 8 Updated May 2, 2025
  • smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    pangenome/smoothxg’s past year of commit activity
    C++ 57 7 7 2 Updated May 1, 2025
  • genotypify Public

    Genotyping lots of samples with big pangenomes

    pangenome/genotypify’s past year of commit activity
    Python 10 MIT 0 0 0 Updated Apr 26, 2025
  • povu Public

    A toolkit for exploring regions of variation in a variation graph

    pangenome/povu’s past year of commit activity
    C++ 10 MIT 1 1 0 Updated Mar 31, 2025
  • gafpack Public

    convert variation graph alignments to coverage maps over nodes

    pangenome/gafpack’s past year of commit activity
    Rust 23 MIT 2 0 0 Updated Jan 29, 2025
  • pggb-workshop Public

    tutorial on pggb

    pangenome/pggb-workshop’s past year of commit activity
    34 7 1 0 Updated Jan 13, 2025
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