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Update match function #164

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mr-eyes wants to merge 2 commits into from
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Update match function #164

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bfa8edd
Update match function
Feb 28, 2018
256efcf
Update match function
Mar 4, 2018
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5 changes: 4 additions & 1 deletion src/KmerIndex.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -1096,9 +1096,12 @@ void KmerIndex::match(const char *s, int l, std::vector<std::pair<KmerEntry, int
auto search2 = kmap.find(rep2);
bool found2 = false;
int found2pos = pos+dist;
if (search2 == kmap.end()) {
if (search2 != kmap.end()) {
// search2 Kmer found!
found2=true;
found2pos = pos;
KmerEntry valE = search2->second;
v.push_back({valE, kit2->second});
} else if (val.contig == search2->second.contig) {
found2=true;
found2pos = pos+dist;
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