Skip to content

Added correction. this refs #9 #10

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
KedoKudo merged 1 commit into from
Feb 18, 2026
+9 −0
Merged

Added correction. this refs #9 #10

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
9 changes: 9 additions & 0 deletions neutronimaging/detector_correction.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@
from numpy.core.fromnumeric import sort
import pandas as pd
from NeuNorm.normalization import Normalization
from timepix_geometry_correction.correct import TimepixGeometryCorrection


def read_shutter_count(filename: str) -> pd.DataFrame:
Expand Down Expand Up @@ -48,6 +49,7 @@ def merge_meta_data(
"""Consolidate meta data from three different dataframes into one"""
_df = spectra.copy(deep=True)
_df_shutter = pd.concat([shutter_count, shutter_time], axis=1)
print(f"{_df_shutter =}")
_df["run_num"] = spectra.index
# initialize fields
_df["shutter_index"] = -1
Expand Down Expand Up @@ -131,6 +133,12 @@ def correct_images(
_tmp += list(_run_num[1:-1])
_idx_to_keep = np.array(_tmp)
_rst = _rst[_idx_to_keep, :, :]

# correct chips alignment
print(f"Performing chips geometry correction")
o_corrector = TimepixGeometryCorrection(images_path=_rst)
_rst = o_corrector.correct(display=False)

return _rst


Expand Down Expand Up @@ -165,3 +173,4 @@ def correct_images(

# test image correction
imgs = correct_images(o_norm, df_meta)

Loading