Repositories list

• 2025_AnnaSemenova_Autoantibody

  Public
  Longitudinal clinical proteomics reveals pneumonia type-specific protein biomarkers and autoantibodies

  R

  •00 forks in schillerlab/2025_AnnaSemenova_Autoantibody•00 stars in schillerlab/2025_AnnaSemenova_Autoantibody•00 issues in schillerlab/2025_AnnaSemenova_Autoantibody•00 pull requests in schillerlab/2025_AnnaSemenova_Autoantibody•Updated Dec 4, 2025Dec 4, 2025

• 2025_Aging_Bleo

  Public
  Jupyter Notebook

  •00 forks in schillerlab/2025_Aging_Bleo•11 star in schillerlab/2025_Aging_Bleo•00 issues in schillerlab/2025_Aging_Bleo•00 pull requests in schillerlab/2025_Aging_Bleo•Updated Jul 23, 2025Jul 23, 2025

• 2025_Laura_Mattner_Mechanosensing_study

  Public
  Jupyter Notebook

  •00 forks in schillerlab/2025_Laura_Mattner_Mechanosensing_study•00 stars in schillerlab/2025_Laura_Mattner_Mechanosensing_study•00 issues in schillerlab/2025_Laura_Mattner_Mechanosensing_study•00 pull requests in schillerlab/2025_Laura_Mattner_Mechanosensing_study•Updated Apr 29, 2025Apr 29, 2025

• 2023_Lang_GoteSchniering_PCLS_perturbations

  Public
  Code repo for Lang, Gote-Schniering, et al. Science Translational Medicine (2023)

  Jupyter Notebook

  •66 forks in schillerlab/2023_Lang_GoteSchniering_PCLS_perturbations•11 star in schillerlab/2023_Lang_GoteSchniering_PCLS_perturbations•00 issues in schillerlab/2023_Lang_GoteSchniering_PCLS_perturbations•00 pull requests in schillerlab/2023_Lang_GoteSchniering_PCLS_perturbations•Updated Aug 3, 2024Aug 3, 2024

• 2024_Bleo_Aging

  Public
  Jupyter Notebook

  •00 forks in schillerlab/2024_Bleo_Aging•00 stars in schillerlab/2024_Bleo_Aging•00 issues in schillerlab/2024_Bleo_Aging•00 pull requests in schillerlab/2024_Bleo_Aging•Updated Jun 27, 2024Jun 27, 2024

• sc-toolbox

  Public archive
  A collection of project templates and useful functions for single-cell data analysis with Scanpy.

  Jupyter Notebook

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  MIT License

  •55 forks in schillerlab/sc-toolbox•2222 stars in schillerlab/sc-toolbox•44 issues in schillerlab/sc-toolbox•44 pull requests in schillerlab/sc-toolbox•Updated Jun 12, 2023Jun 12, 2023

• scData_Tutorial_CPC

  Public
  Jupyter Notebook

  •22 forks in schillerlab/scData_Tutorial_CPC•11 star in schillerlab/scData_Tutorial_CPC•00 issues in schillerlab/scData_Tutorial_CPC•00 pull requests in schillerlab/scData_Tutorial_CPC•Updated Dec 7, 2021Dec 7, 2021

• scData_Tutorial

  Public
  Jupyter Notebook

  •66 forks in schillerlab/scData_Tutorial•11 star in schillerlab/scData_Tutorial•00 issues in schillerlab/scData_Tutorial•00 pull requests in schillerlab/scData_Tutorial•Updated Nov 25, 2021Nov 25, 2021

• 2021_PRMT7_regulates_Monocyte_Extravasation

  Public
  Jupyter Notebook

  •22 forks in schillerlab/2021_PRMT7_regulates_Monocyte_Extravasation•00 stars in schillerlab/2021_PRMT7_regulates_Monocyte_Extravasation•00 issues in schillerlab/2021_PRMT7_regulates_Monocyte_Extravasation•00 pull requests in schillerlab/2021_PRMT7_regulates_Monocyte_Extravasation•Updated Sep 29, 2021Sep 29, 2021

• 2021_Stromal_Fate_Restriction

  Public
  00 forks in schillerlab/2021_Stromal_Fate_Restriction•00 stars in schillerlab/2021_Stromal_Fate_Restriction•00 issues in schillerlab/2021_Stromal_Fate_Restriction•00 pull requests in schillerlab/2021_Stromal_Fate_Restriction•Updated May 19, 2021May 19, 2021

• sc-containers

  Public
  A collection of containers for single-cell analyses conducted at the Schillerlab.

  Dockerfile

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  Apache License 2.0

  •00 forks in schillerlab/sc-containers•11 star in schillerlab/sc-containers•11 issue in schillerlab/sc-containers•00 pull requests in schillerlab/sc-containers•Updated Apr 20, 2021Apr 20, 2021

• 2020_Mayr

  Public
  This repo contains the analysis code describing the findings of Mayr_et_al

  Jupyter Notebook

  •88 forks in schillerlab/2020_Mayr•00 stars in schillerlab/2020_Mayr•00 issues in schillerlab/2020_Mayr•00 pull requests in schillerlab/2020_Mayr•Updated Mar 2, 2021Mar 2, 2021

• 2020_Inhibition_LTbetaR-signalling

  Public
  Reproducibility repo accompanying Thomas M Conlon, Mathias Heikenwälder et al. and Ali Yildirim "Inhibition of LTβR-signalling blocks epithelial apoptosis and a…

  Jupyter Notebook

  •33 forks in schillerlab/2020_Inhibition_LTbetaR-signalling•00 stars in schillerlab/2020_Inhibition_LTbetaR-signalling•00 issues in schillerlab/2020_Inhibition_LTbetaR-signalling•00 pull requests in schillerlab/2020_Inhibition_LTbetaR-signalling•Updated Jul 9, 2020Jul 9, 2020

• 2019_Strunz

  Public
  Reproducibility repo accompanying Angelidis et al. "Longitudinal single cell transcriptomics reveals Krt8+ alveolar epithelial progenitors in lung regeneration"

  Jupyter Notebook

  •1010 forks in schillerlab/2019_Strunz•00 stars in schillerlab/2019_Strunz•00 issues in schillerlab/2019_Strunz•00 pull requests in schillerlab/2019_Strunz•Updated Sep 3, 2019Sep 3, 2019

• 2018_Angelidis

  Public
  Reproducibility repo accompanying Angelidis et al. "An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics"

  R

  •66 forks in schillerlab/2018_Angelidis•00 stars in schillerlab/2018_Angelidis•00 issues in schillerlab/2018_Angelidis•00 pull requests in schillerlab/2018_Angelidis•Updated Feb 28, 2019Feb 28, 2019