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setup-nextflow
Publicdenovotranscript
PublicA pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
test-datasets
Publicops
Public- A single-cell RNAseq pipeline for 10X genomics data
funcscan
Publicpixelator
PublicPipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)pangenome
Publictools
Publicraredisease
PublicCall and score variants from WGS/WES of rare disease patients.meerpipe
Publicdifferentialabundance
Publicfastqrepair
PublicA pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disorderedmcmicro
PublicAn end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.variantbenchmarking
Publicconfigs
PublicConfig files used to define parameters specific to compute environments at different Institutionsseqinspector
Publicrnavar
Publictaxprofiler
PublicHighly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic datamag
PublicAssembly and binning of metagenomesisoseq
Publicpathogensurveillance
Publicfastquorum
Publicmhcquant
Publicampliseq
PublicAmplicon sequencing analysis workflow using DADA2 and QIIME2logos
Public