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    39 repositories

    • igv

      Public
      Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
      Java
      •
      MIT License
      •402•710•187•1•Updated Jan 5, 2026Jan 5, 2026

    • igv-data

      Public
      IGV genome configuration files and associated metadata.
      JavaScript
      •
      MIT License
      •1•1•0•0•Updated Jan 2, 2026Jan 2, 2026

    • igv-webapp

      Public
      IGV Web App
      JavaScript
      •
      MIT License
      •50•126•3•0•Updated Dec 18, 2025Dec 18, 2025

    • igv.js

      Public
      Embeddable genomic visualization component based on the Integrative Genomics Viewer
      JavaScript
      •
      MIT License
      •243•703•87•0•Updated Dec 18, 2025Dec 18, 2025

    • igvweb-mcp

      Public
      JavaScript
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • igv-docs

      Public
      Markdown-based documentation website - IGV desktop application
      JavaScript
      •2•7•2•0•Updated Dec 7, 2025Dec 7, 2025

    • igv-mcp

      Public
      An MCP (Model Context Protocol) server for controlling Integrative Genomics Viewer (IGV)
      JavaScript
      •0•0•0•0•Updated Dec 7, 2025Dec 7, 2025

    • spacewalk

      Public
      Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.
      JavaScript
      •
      MIT License
      •1•11•1•0•Updated Nov 8, 2025Nov 8, 2025

    • igv-reports

      Public
      Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
      Python
      •
      MIT License
      •59•396•1•0•Updated Nov 3, 2025Nov 3, 2025

    • igv-widgets

      Public
      UI widgets for igvteam applications
      JavaScript
      •3•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • igv-webapp-docs

      Public
      JavaScript
      •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • igv-utils

      Public
      JavaScript
      •5•5•2•0•Updated Oct 1, 2025Oct 1, 2025

    • ucsc_dev

      Public
      JavaScript
      •1•0•0•1•Updated Sep 23, 2025Sep 23, 2025

    • igv.js-docs

      Public
      JavaScript
      •2•3•4•1•Updated Aug 12, 2025Aug 12, 2025

    • data-modal

      Public
      A data resource browser and selector based on DataTables. Used by igv applications for selecting files from ENCODE and other data resources.
      JavaScript
      •
      MIT License
      •2•2•0•0•Updated May 29, 2025May 29, 2025

    • igv.js-flask

      Public
      Example project for integrating igv.js and flask
      Python
      •
      MIT License
      •15•26•1•2•Updated May 17, 2025May 17, 2025

    • pyTwobit

      Public
      Fast python twobit reader for local and remote files.
      Python
      •
      MIT License
      •0•1•0•0•Updated May 14, 2025May 14, 2025

    • igv-notebook

      Public
      Module for embedding igv.js in an IPython notebook
      JavaScript
      •
      MIT License
      •11•80•4•0•Updated Feb 7, 2025Feb 7, 2025

    • cram-js

      Public
      Read CRAM v3 and v2 in node or in the browser
      TypeScript
      •
      MIT License
      •8•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • igv-ui

      Public
      UI components for igv.js and related projects
      JavaScript
      •
      MIT License
      •3•1•1•0•Updated Feb 29, 2024Feb 29, 2024

    • juicebox-notebook

      Public
      JavaScript
      •
      MIT License
      •0•3•0•0•Updated Sep 16, 2023Sep 16, 2023

    • circular-view-app

      Public
      JavaScript
      •1•0•0•3•Updated Aug 3, 2023Aug 3, 2023

    • circular-view

      Public
      Wrapper class for JBrowse genomic circular view component
      JavaScript
      •
      MIT License
      •0•0•1•0•Updated Apr 27, 2023Apr 27, 2023

    • shoebox

      Public
      JavaScript
      •
      MIT License
      •0•0•2•0•Updated Apr 8, 2023Apr 8, 2023

    • google-utils

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2023Apr 1, 2023

    • igv.js-react

      Public
      Example project for using igv.js with React
      JavaScript
      •1•3•0•0•Updated Mar 27, 2023Mar 27, 2023

    • bgzip

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Feb 23, 2023Feb 23, 2023

    • extractome

      Public
      Creates an "extracted" genome assembly from a fasta + list of regions
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 6, 2023Jan 6, 2023

    • swcproject

      Public
      SpaceWalk CLI tool to convert legacy point-cloud and ensemble files to .sw format
      JavaScript
      •0•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • igv-juicebox

      Public
      Prototypes exploring potential igv.js <-> juicebox.js interactions.
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Aug 3, 2022Aug 3, 2022