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    11 repositories

    • ASEReadCounter_star

      Public
      Preprocessing sequencing data for allele-specific analysis
      Python
      •
      GNU General Public License v3.0
      •5•11•8•0•Updated Mar 11, 2025Mar 11, 2025

    • controlFreq

      Public
      Precise allele-specific analysis of RNA-seq at scale.
      R
      •
      Other
      •0•2•0•0•Updated Mar 11, 2025Mar 11, 2025

    • fastq2allelictabs

      Public
      A streamlined pipeline for converting RNA‑seq FASTQ files into allele‑specific count tables
      Python
      •0•2•0•0•Updated Mar 11, 2025Mar 11, 2025

    • Qllelic

      Public
      Enabling differential allele-specific analysis
      R
      •
      GNU General Public License v3.0
      •2•11•6•0•Updated Dec 28, 2024Dec 28, 2024

    • MAE

      Public
      Working repository for MAE project.
      MIT License
      •0•0•0•0•Updated Apr 6, 2023Apr 6, 2023

    • Alelle-Specific-Analysis-Knowledge-Base

      Public
      0•0•0•0•Updated Jul 11, 2022Jul 11, 2022

    • drug-screen-seq

      Public
      Arrayed screening by RNA sequencing
      Perl
      •0•1•0•0•Updated Nov 15, 2021Nov 15, 2021

    • QCumber

      Public
      Replaced by Qllelic (Enabling differential allele-specific analysis)
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 25, 2020Feb 25, 2020

    • ASE

      Public
      early version of (Pipeline for detection of differential allelic imbalance from RNA-seq)
      rna-seqallele-specificallele-specific-expression
      HTML
      •
      MIT License
      •5•6•0•1•Updated Feb 25, 2020Feb 25, 2020

    • gimelbrantlab.github.io

      Public
      HTML
      •0•0•0•0•Updated Jan 27, 2020Jan 27, 2020

    • magic

      Public
      Tool to identify monoallelic expression in polyclonal samples using ChIP-Seq data.
      R
      •
      MIT License
      •5•5•0•0•Updated Mar 18, 2019Mar 18, 2019