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    63 repositories

    • kipoiseq2

      Public
      Python
      •
      MIT License
      •0•0•0•14•Updated Oct 17, 2026Oct 17, 2026

    • AbExp

      Public
      Aberrant gene expression prediction across human tissues based on DNA sequence variants
      Python
      •
      MIT License
      •1•10•0•4•Updated Oct 16, 2026Oct 16, 2026

    • PROTRIDER

      Public
      Python
      •
      MIT License
      •5•6•0•0•Updated Oct 16, 2026Oct 16, 2026

    • FRASER

      Public
      FRASER - Find RAre Splicing Events in RNA-seq
      rna-seqrdiagnostics
      rna-seqrdiagnosticsoutlier-detectionsplicingrare-diseaseaberrant-splicing
      R
      •
      Other
      •26•58•25•2•Updated Oct 10, 2026Oct 10, 2026

    • NMD-Scanner

      Public
      Jupyter Notebook
      •
      MIT License
      •1•3•0•2•Updated Oct 8, 2026Oct 8, 2026

    • ukbbgym

      Public
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Oct 6, 2026Oct 6, 2026

    • AbExp-utils

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 29, 2026Sep 29, 2026

    • PepPr

      Public
      Python
      •0•0•0•0•Updated Sep 24, 2026Sep 24, 2026

    • ukbb-utils-gagneur

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 18, 2026Sep 18, 2026

    • absplice2

      Public
      Python
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Aug 31, 2026Aug 31, 2026

    • solve-rd-rna-seq-paper

      Public
      R
      •0•0•0•0•Updated Aug 25, 2026Aug 25, 2026

    • scooby

      Public
      scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.
      Python
      •
      MIT License
      •9•70•3•2•Updated Aug 10, 2026Aug 10, 2026

    • dependencies_DNALM

      Public
      Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements
      Jupyter Notebook
      •
      MIT License
      •1•30•3•0•Updated Aug 3, 2026Aug 3, 2026

    • AbSplice2_analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 28, 2026May 28, 2026

    • drop

      Public
      Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
      rna-seqpipelinegenetic-diagnosis
      rna-seqpipelinegenetic-diagnosis
      Python
      •
      MIT License
      •57•173•45•1•Updated Mar 24, 2026Mar 24, 2026

    • funcRVP

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Mar 1, 2026Mar 1, 2026

    • OUTRIDER

      Public
      OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
      rna-seqrdiagnostics
      rna-seqrdiagnosticsoutlier-detectionmendelian-geneticsexpression-analysiscount-data
      R
      •
      Other
      •13•58•13•0•Updated Feb 11, 2026Feb 11, 2026

    • pyDataViz

      Public
      Python version of the DataViz script
      JavaScript
      •1•1•1•0•Updated Feb 5, 2026Feb 5, 2026

    • Modanovo

      Public
      Python
      •
      Apache License 2.0
      •1•4•2•0•Updated Dec 4, 2025Dec 4, 2025

    • drop_demo_data

      Public
      1•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • AbExp-web

      Public
      HTML
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • splicemap

      Public
      Jupyter Notebook
      •4•25•2•0•Updated Jul 29, 2025Jul 29, 2025

    • absplice

      Public
      Python
      •4•42•1•2•Updated Jul 3, 2025Jul 3, 2025

    • tMAE

      Public
      R
      •
      MIT License
      •5•1•0•0•Updated Jun 3, 2025Jun 3, 2025

    • scooby_reproducibility

      Public
      Jupyter Notebook
      •
      MIT License
      •2•8•1•0•Updated Jun 1, 2025Jun 1, 2025

    • Watershed

      Public
      Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq
      Jupyter Notebook
      •13•1•0•0•Updated Feb 26, 2025Feb 26, 2025

    • abexp-ukbb-prs

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 26, 2025Feb 26, 2025

    • abexp-ukbb-variant-clumping

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 26, 2025Feb 26, 2025

    • wBuild

      Public
      R project report builder
      bioinformaticssnakemakewbuild
      bioinformaticssnakemakewbuild
      Python
      •6•4•11•6•Updated Feb 26, 2025Feb 26, 2025

    • spectralis

      Public
      Python
      •8•17•5•0•Updated Oct 1, 2024Oct 1, 2024
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