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@TheDongLab Dong Lab

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    9 repositories

    • BRAINcode

      Public
      Script and pipeline for BRAINcode project
      R
      •5•0•0•0•Updated Jul 21, 2026Jul 21, 2026

    • VizIt

      Public
      VizIt! - An open-source toolkit for visualizing your single-cell multi-omics data online easily
      HTML
      •0•1•0•2•Updated Jun 9, 2026Jun 9, 2026

    • EVscope

      Public
      EVscope: A Modular Pipeline for EV-Enriched Total RNA-seq QC, EM-Weighted Coverage Profiling, and RNA-Biotype Annotation
      circrnaevrnaseq-pipeline
      circrnaevrnaseq-pipelinesmall-rna-analysisextracelluar-vesicle
      Python
      •
      MIT License
      •1•1•2•1•Updated May 28, 2026May 28, 2026

    • onboarding

      Public
      Onboarding materials for the Dong Lab
      Creative Commons Zero v1.0 Universal
      •24•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • PD5D_UCSC_trackHub

      Public
      This repository is for trackhub which contains the information for ATAC-seq and RNA-seq
      HTML
      •
      MIT License
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • ReRx

      Public
      ReRx is a drug repurposing toolkit that identifies disease-protective or disease-prone drugs by analyzing medication usage patterns across multiple cohorts.
      R
      •0•0•0•1•Updated Sep 2, 2025Sep 2, 2025

    • brainPAS

      Public
      Python
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • SpatialTranscriptomics

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • enHunter

      Public
      A pipeline to identify enhancer RNAs (eRNAs) from total RNA-seq data
      Shell
      •0•4•0•0•Updated Nov 30, 2023Nov 30, 2023
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