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    303 repositories

    • shelley

      Public
      Beautiful shelley 🐢
      Python
      •
      GNU General Public License v3.0
      •0•1•14•1•Updated Jul 10, 2026Jul 10, 2026

    • long-read-sequencing-workshop-2026

      Public
      Materials for the 2026 delivery of the Australian BioCommons long read sequencing analysis workshop.
      1•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • links

      Public
      Url shortener for Sydney Informatics Hub links
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • BioShell

      Public
      Shell
      •1•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • BioShell-User-Guide

      Public
      HTML
      •
      MIT License
      •1•1•0•0•Updated Jul 9, 2026Jul 9, 2026

    • omeka-s-docker

      Public
      Dockerisation for the Curated Collections distribution of Omeka S
      PHP
      •0•0•6•0•Updated Jul 9, 2026Jul 9, 2026

    • scRNAseq_Workshop

      Public
      Single cell RNAseq workshop
      R
      •3•0•0•0•Updated Jul 9, 2026Jul 9, 2026

    • Parabricks-Genomics-nf

      Public
      Scalable Nextflow implementation of germline alignment and short variant calling with Parabricks for NCI Gadi HPC.
      Nextflow
      •
      GNU General Public License v3.0
      •3•8•7•0•Updated Jul 9, 2026Jul 9, 2026

    • scrnavigator-nf

      Public
      A Nextflow pipeline for processing single cell RNA sequencing data and performing differential expression and functional enrichment analyses.
      GNU General Public License v3.0
      •0•0•4•3•Updated Jul 8, 2026Jul 8, 2026

    • ngc-omeka

      Public
      An enduring web publishing platform solution for Humanities, Arts and Social Sciences (HASS) and Indigenous research data collections.
      PHP
      •1•0•0•2•Updated Jul 8, 2026Jul 8, 2026

    • stats-resources

      Public
      SIH Statistics resources
      HTML
      •
      Other
      •4•7•1•0•Updated Jul 8, 2026Jul 8, 2026

    • scrna-analysis

      Public
      A set of notebooks and scripts for analysing single cell RNA sequencing data.
      R
      •
      GNU General Public License v3.0
      •0•3•22•1•Updated Jul 6, 2026Jul 6, 2026

    • blockparty

      Public
      For the artists
      HTML
      •0•0•0•0•Updated Jun 30, 2026Jun 30, 2026

    • gpu-cluster-onboarding-guide

      Public
      CSS
      •
      MIT License
      •0•1•0•2•Updated Jun 29, 2026Jun 29, 2026

    • proteinfold

      Public
      Protein 3D structure prediction pipeline
      HTML
      •
      MIT License
      •73•0•0•0•Updated Jun 24, 2026Jun 24, 2026

    • rocrate-tabular

      Public
      Python library for converting an RO-Crate to tabular representations
      HTML
      •4•3•38•0•Updated Jun 24, 2026Jun 24, 2026

    • OmekaS-MappingExtensions

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jun 24, 2026Jun 24, 2026

    • omeka-s-import-tools

      Public
      Python toolkit for tidying CSVs for Omeka S import
      Python
      •0•0•1•1•Updated Jun 23, 2026Jun 23, 2026

    • Pipe_7270_New_Lab_Cell_Segmentation

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 18, 2026Jun 18, 2026

    • training-template

      Public template
      SIH Quatro training template for R and Python
      Jupyter Notebook
      •
      MIT License
      •1•0•1•0•Updated Jun 18, 2026Jun 18, 2026

    • IPA-user-guide

      Public
      Links and other details for licensed softwares at SIH
      0•0•0•0•Updated Jun 16, 2026Jun 16, 2026

    • template-nf

      Public template
      A straightforward Nextflow workflow template generator.
      templateworkflowbioinformatics
      templateworkflowbioinformaticspipelinegenomicsnextflownextflow-pipelinedsl2
      0•3•5•0•Updated Jun 12, 2026Jun 12, 2026

    • Nextflow_DSL2_template

      Public
      Template for creating Nextflow DSL2 pipelines
      Nextflow
      •
      GNU General Public License v3.0
      •2•0•4•0•Updated Jun 12, 2026Jun 12, 2026

    • doc-bot

      Public
      0•1•0•0•Updated Jun 11, 2026Jun 11, 2026

    • nf4ls-materials

      Public
      NF4LS trainer materials
      Shell
      •
      Creative Commons Attribution 4.0 International
      •1•0•6•0•Updated Jun 9, 2026Jun 9, 2026

    • Germline-StructuralV-nf

      Public
      Germline structural variant calling pipeline for short read WGS datasets
      workflowbioinformaticspipeline
      workflowbioinformaticspipelinegenomicsnextflowngsmantabamsurvivorstructural-variants
      Nextflow
      •
      GNU General Public License v3.0
      •5•9•6•0•Updated Jun 4, 2026Jun 4, 2026

    • How-to-Guide-BioShell

      Public template
      Draft How-to Guide for BioShell.
      SCSS
      •
      MIT License
      •3•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • cbir-screening-tool

      Public
      Online scoring tool for clinicians administering the Cambridge Behavioural Inventory-Revised (CBI-R).
      TypeScript
      •0•0•0•0•Updated May 28, 2026May 28, 2026

    • customising-nfcore-workshop-2026

      Public
      Materials for the 2026 delivery of the Customising nf-core Australian BioCommons workshop.
      Shell
      •2•0•4•0•Updated May 28, 2026May 28, 2026

    • guts

      Public
      Actions and client to derive container guts! 🤓
      Python
      •
      Mozilla Public License 2.0
      •3•0•0•0•Updated May 27, 2026May 27, 2026
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