Plant-Food-Research-Open

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7 repositories

assemblyqc
Public
A Nextflow pipeline for evaluating assembly quality
quality-control statistics genome taxonomy assembly repeat hi-c report k-mer synteny
Nextflow
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MIT License
•6•29•22•1•Updated Mar 12, 2025Mar 12, 2025
genepal
Public
A Nextflow pipeline for genome and pan-genome annotation
gene annotation genome phased pangenome
Nextflow
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MIT License
•6•10•32•1•Updated Mar 9, 2025Mar 9, 2025
TEgenomeSimulator
Public
TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.
Python
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GNU General Public License v3.0
•1•1•0•0•Updated Feb 4, 2025Feb 4, 2025
moiraine
Public
An R package to construct Multi-Omics Integration Reproducible Analyses in R.
R
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Other
•1•4•0•0•Updated Jan 22, 2025Jan 22, 2025
moiraine-manual
Public
User manual for the moiraine R package
R
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MIT License
•0•0•0•0•Updated Aug 11, 2024Aug 11, 2024
FieldNBalance
Public
Nitrogen balance model components and test procedures
python dotnet crop-model mechanistic-models crop-modeling biophysical-modeling mechanistic-modeling nitrogen-balance
Jupyter Notebook
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GNU General Public License v3.0
•4•2•2•0•Updated Jul 16, 2024Jul 16, 2024
HEImiRA-pipeline
Public
Host Environment Intersection miRNA Annotation pipeline
Nextflow
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GNU General Public License v3.0
•0•0•0•0•Updated Jun 19, 2023Jun 19, 2023