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@MSDLLCpapers MSD Inventing for Life

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    27 repositories

    • obsidian

      Public
      Algorithmic process optimization and AI experiment design
      optimizationbayesian-optimizationactive-learningprocess-design
      Python
      •
      GNU General Public License v3.0
      •6•33•9•1•Updated Jul 30, 2025Jul 30, 2025

    • teal-agents

      Public
      Python
      •
      Other
      •3•7•0•2•Updated Jul 30, 2025Jul 30, 2025

    • kmcurvely

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•7•1•Updated Jul 28, 2025Jul 28, 2025

    • dynacem

      Public
      Cost-effectiveness modeling with dynamic pricing and dynamic uptake
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Jul 4, 2025Jul 4, 2025

    • miRQuest

      Public
      An RShiny app for the analysis of high-throughput miRNA sequencing data
      R
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Jun 27, 2025Jun 27, 2025

    • promb

      Public
      Humanness of de-novo designed proteins
      Jupyter Notebook
      •
      MIT License
      •5•22•1•1•Updated May 19, 2025May 19, 2025

    • dedenser

      Public
      A Python tool for creating and downsampling chemical pointclouds.
      Python
      •
      Other
      •2•12•0•1•Updated Apr 18, 2025Apr 18, 2025

    • dre-rave-ms

      Public
      RAVE MS is a web application that provides a series of pre-programmed protocols and commands to the SIELC Alltesta™ (https://sielc.com/alltesta-gradient-automated-analyzer) as well as custom data analytics to analyze results from direct injection mass spectrometry.
      Python
      •
      Other
      •0•0•0•0•Updated Apr 14, 2025Apr 14, 2025

    • QComp

      Public
      A robust, interpretable, non-iterative data completion framework for sparse datasets in drug discovery.
      Jupyter Notebook
      •
      Other
      •1•2•0•0•Updated Apr 1, 2025Apr 1, 2025

    • binding-pose-metadynamics

      Public
      Python script to run binding pose metadynamics workflow to score conformational stability of macrocyclic peptides using Desmond in Schrodinger.
      Python
      •
      Other
      •0•3•0•0•Updated Mar 21, 2025Mar 21, 2025

    • DRAGoN

      Public
      DRUG-seq (Digital RNA with pertUrbation of Genes) [1] is a new technique that provides a cost-effective way for high-throughput, whole transcriptome RNA-seq profiling.
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 28, 2025Feb 28, 2025

    • py-pkglite

      Public
      A simple framework for packing source packages written in any programming language into a text file and restoring them into the original directory structure
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • HeterocycleReactivityML

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jan 17, 2025Jan 17, 2025

    • stan_hbm

      Public
      This code may accompany the publication of papers on HBM for basket trials.
      Stan
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • CAMIS

      Public
      R
      •
      Apache License 2.0
      •72•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • BioPhi

      Public
      0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • usevaxpmx

      Public
      R
      •
      Other
      •0•1•0•0•Updated Sep 6, 2024Sep 6, 2024

    • Opentrons-OT2-BioChemical-Assays

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Aug 28, 2024Aug 28, 2024

    • AnNoBrainer

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated Aug 7, 2024Aug 7, 2024

    • mkanr

      Public
      Rich Text Format
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

    • mtag-Spatial_Abx_Manuscript

      Public
      Python
      •
      Other
      •0•0•0•0•Updated May 1, 2024May 1, 2024

    • AbMelt

      Public
      Python
      •
      Other
      •5•11•3•0•Updated Apr 22, 2024Apr 22, 2024

    • psm3mkv

      Public
      psm3mkv: A package to evaluate the fit and efficiency of three state oncology cost-effectiveness model structures
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • TraceTrack

      Public
      Python
      •
      GNU General Public License v3.0
      •8•2•0•0•Updated Apr 12, 2024Apr 12, 2024

    • r2rtf

      Public
      Easily Create Production-Ready Rich Text Format (RTF) Table and Figure
      Rich Text Format
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

    • simvaxpmx

      Public
      Elucidating vaccine efficacy using a correlate of protection, demographics, and logistic regression
      R
      •
      Other
      •1•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • mRNAid

      Public
      Python
      •
      Other
      •12•5•0•0•Updated Apr 21, 2023Apr 21, 2023