Repositories list

• LesionLocator

  Public
  0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• acvl_utils

  Public
  Python

  •3•10•2•2•Updated Feb 26, 2025Feb 26, 2025

• Longitudinal-Difference-Weighting

  Public
  Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting

  Python

  •

  Apache License 2.0

  •0•2•0•0•Updated Feb 25, 2025Feb 25, 2025

• nnUNet

  Public
  segmentation

  Python

  •

  Apache License 2.0

  •1.9k•6.3k•264•23•Updated Feb 25, 2025Feb 25, 2025

• predictive_image_biomarker_analysis

  Public
  Code for the paper "Enhancing predictive imaging biomarker discovery through treatment effect analysis", which can be used for training and evaluating CATE estimation models for identifying predictive imaging biomarkers from pre-treatment images.

  Python

  •

  Apache License 2.0

  •1•1•0•0•Updated Feb 24, 2025Feb 24, 2025

• ToothSeg

  Public
  Python

  •0•1•0•0•Updated Feb 19, 2025Feb 19, 2025

• iScience_GlioLymph_classification

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

• batchgeneratorsv2

  Public
  Python

  •

  Apache License 2.0

  •7•17•0•2•Updated Feb 13, 2025Feb 13, 2025

• segmentation_failures_benchmark

  Public
  Python

  •

  Apache License 2.0

  •1•10•1•0•Updated Feb 12, 2025Feb 12, 2025

• niicat

  Public
  This is a tool to quickly preview nifti images on the terminal

  Python

  •

  GNU General Public License v2.0

  •10•58•2•1•Updated Feb 5, 2025Feb 5, 2025

• Foreground-and-Anonymization-Area-Segmentation

  Public
  Other

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• MedVol

  Public
  Python

  •

  Apache License 2.0

  •0•16•0•0•Updated Dec 29, 2024Dec 29, 2024

• HD-BET

  Public
  MRI brain extraction tool

  Python

  •

  Apache License 2.0

  •70•317•23•7•Updated Dec 18, 2024Dec 18, 2024

• ADetect

  Public
  "Automated detection of aortic dissections (AD) from CT scans using deep segmentation and optimized thresholding. Applicable in emergency clinical settings, for research purposes only."

  Python

  •

  Apache License 2.0

  •0•3•0•0•Updated Dec 9, 2024Dec 9, 2024

• MultiTalent

  Public
  Implemention of the Paper "MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation"

  Python

  •

  Apache License 2.0

  •3•54•1•0•Updated Dec 3, 2024Dec 3, 2024

• MedSAMCodingPowerUnit

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• mario

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• napari-nifti

  Public
  Python

  •

  Apache License 2.0

  •1•4•1•0•Updated Nov 18, 2024Nov 18, 2024

• batchgenerators

  Public
  A framework for data augmentation for 2D and 3D image classification and segmentation

  Jupyter Notebook

  •

  Apache License 2.0

  •225•1.1k•38•12•Updated Nov 7, 2024Nov 7, 2024

• MurineAirwaySegmentation

  Public
  This is a joint project between Helmholtz Imaging (located at DKFZ) and Lin Yang and Otmar Schmid (Helmholtz Munich).

  Python

  •

  Apache License 2.0

  •2•10•1•0•Updated Nov 6, 2024Nov 6, 2024

• Skeleton-Recall

  Public
  Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures

  Python

  •

  Apache License 2.0

  •5•90•4•0•Updated Nov 4, 2024Nov 4, 2024

• MedNeXt

  Public
  [MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.

  transformersmedical-imagingmedical-image-analysis+ 7medical-image-segmentationunet-image-segmentationmri-segmentationmedical-aict-segmentationconvnextmednext

  Python

  •

  Apache License 2.0

  •33•381•14•0•Updated Nov 2, 2024Nov 2, 2024

• autopet-3-submission

  Public
  Python

  •

  Apache License 2.0

  •1•10•1•1•Updated Oct 29, 2024Oct 29, 2024

• miccai2024_midi-b-submission

  Public
  Python

  •

  Apache License 2.0

  •0•3•0•0•Updated Oct 20, 2024Oct 20, 2024

• miccai2024_cl-detection2024

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• miccai2024_autopet3_datacentric

  Public
  Python

  •

  Apache License 2.0

  •1•6•0•0•Updated Oct 1, 2024Oct 1, 2024

• agent-sam

  Public
  Segment Anything model wrapper used by the Medical Imaging Interaction Toolkit (MITK).

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•0•0•Updated Sep 13, 2024Sep 13, 2024

• BraTPRO

  Public
  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Sep 2, 2024Sep 2, 2024

• MITK-Diffusion

  Public
  MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

  simulationdicomregistration+ 17segmentationmodellingbrainpeakdiffusion-mritractographydenoising+ 10

  C++

  •

  Other

  •15•90•3•0•Updated Aug 28, 2024Aug 28, 2024

• 2D3D-Privacy-Attacks-In-federated-Medical-Imaging

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024