Repositories list

• fileglancer

  Public
  Browse, share, and publish data in the Janelia file system

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•3•Updated Jul 23, 2025Jul 23, 2025

• fileglancer-hub

  Public
  Jupyterhub launcher configuration for the fileglancer application

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 23, 2025Jul 23, 2025

• gpt-semantic-search

  Public
  Semantic search for Janelia resources using GPT models

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•3•1•0•Updated Jul 23, 2025Jul 23, 2025

• videoAnnotation

  Public
  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•1•Updated Jul 23, 2025Jul 23, 2025

• tmt

  Public
  A toolbox of Matlab functions useful for data analysis, especially of electrophysiology data.

  MATLAB

  •1•2•0•0•Updated Jul 23, 2025Jul 23, 2025

• tensorswitch

  Public
  This package provides a unified entry point and organized task modules for managing N5/Zarr dataset conversions and downsampling. It centralizes your workflow into a single pipeline to reduce manual work and errors.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•0•Updated Jul 22, 2025Jul 22, 2025

• G4_Display_Tools

  Public
  Collection of tools for the G4 LED arena displays.

  MATLAB

  •

  Creative Commons Attribution 4.0 International

  •5•2•12•0•Updated Jul 22, 2025Jul 22, 2025

• neuronbridge-services

  Public
  AWS Services for NeuronBridge

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•0•19•Updated Jul 22, 2025Jul 22, 2025

• jacs-dashboard

  Public
  Dashboard interface for the JACSv2 services ecosystem.

  JavaScript

  •

  MIT License

  •0•0•4•3•Updated Jul 21, 2025Jul 21, 2025

• BigStitcher-Spark

  Public
  Running compute-intense parts of BigStitcher distributed

  Java

  •

  BSD 2-Clause "Simplified" License

  •13•26•15•3•Updated Jul 21, 2025Jul 21, 2025

• containers

  Public
  Containers for workflow plugins

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• easifish

  Public
  Nextflow

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• hortacloud-website

  Public
  Documentation website for HortaCloud

  neurosciencejaneliahortacloud

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•3•0•4•Updated Jul 21, 2025Jul 21, 2025

• bigstream

  Public
  Tools for distributed alignment of massive images

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •21•85•13•3•Updated Jul 21, 2025Jul 21, 2025

• pydantic-ome-ngff

  Public
  Pydantic models for OME-NGFF

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•24•6•1•Updated Jul 21, 2025Jul 21, 2025

• neuronbridge-data

  Public
  Versioned NeuronBridge data files deployed to S3 buckets

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• neuronbridge-precompute

  Public
  Utilities for indexing and transferring of NeuronBridge-related files

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 20, 2025Jul 20, 2025

• colormipsearch

  Public
  Distributed Color Depth MIP Search

  neurosciencesearch-algorithmneuron

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•0•2•Updated Jul 18, 2025Jul 18, 2025

• dis-utilities

  Public
  Utilities for Data and Information Services

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•14•1•Updated Jul 18, 2025Jul 18, 2025

• fileglancer-central

  Public
  Central metadata server for Fileglancer deployments

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• doi_common

  Public
  Library of common DOI-related functions for Python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• SOFIMA-scripts

  Public
  wrapper to batch jobs to cluster

  Python

  •

  Other

  •0•0•0•0•Updated Jul 17, 2025Jul 17, 2025

• neuronbridge

  Public
  EM/LM neuron search

  neuroscienceneuroimagingneurons+ 3drosophilajaneliaaws

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•0•11•Updated Jul 17, 2025Jul 17, 2025

• EM_recon_pipeline

  Public
  Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•3•0•2•Updated Jul 17, 2025Jul 17, 2025

• nf-BigStitcher-Spark

  Public
  Run BigStitcher-Spark using Nextflow

  Nextflow

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jul 16, 2025Jul 16, 2025

• nextflow-modules

  Public
  Nextflow modules for use with nf-core tooling

  Nextflow

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jul 16, 2025Jul 16, 2025

• phase-change

  Public
  archive data to cold storage

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

• pocaduck

  Public
  PoCADuck is a library for efficiently storing and retrieving vast numbers of point clouds associated with segmentation labels.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Jul 14, 2025Jul 14, 2025

• jrc_common

  Public
  Library of common utility functions for Python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

• diff-rsync-o

  Public
  Linux scripts for transferring data from rig computers

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jul 9, 2025Jul 9, 2025