Generic Model Organism Database Project

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101 repositories

jbrowse-components
Public
Source code for JBrowse 2, a modern React-based genome browser
visualization bioinformatics genomics jbrowse
TypeScript
•
Apache License 2.0
•63•215•310•20•Updated Jan 8, 2025Jan 8, 2025
Apollo3
Public
JBrowse 2 plugin for editing annotations on an Apollo server
TypeScript
•
Apache License 2.0
•4•9•57•11•Updated Jan 8, 2025Jan 8, 2025
vcf-js
Public
High performance Variant Call Format (VCF) parser in pure JavaScript
TypeScript
•
MIT License
•5•24•1•0•Updated Jan 7, 2025Jan 7, 2025
react-msaview
Public
A multiple sequence alignment viewer
TypeScript
•
MIT License
•1•19•25•0•Updated Jan 6, 2025Jan 6, 2025
jbrowse-plugin-list
Public
List of plugins for the JBrowse 2 plugin store.
5•2•2•2•Updated Jan 3, 2025Jan 3, 2025
jbrowse-plugin-multilevel-linear-view
Public
JBrowse 2 plugin that adds a linear genome view that can show multiple zoom levels
TypeScript
•
Apache License 2.0
•0•0•8•0•Updated Jan 3, 2025Jan 3, 2025
gff-js
Public
parse and format streams of GFF3, for node or webpack
genomics
TypeScript
•
MIT License
•6•11•1•2•Updated Jan 3, 2025Jan 3, 2025
bam-js
Public
Parse BAM and BAM index files in javascript for node and the browser
TypeScript
•
MIT License
•9•22•9•1•Updated Jan 2, 2025Jan 2, 2025
bgzf-filehandle
Public
Nodejs filehandle for reading bgzip+.gzi compressed files
TypeScript
•
MIT License
•4•7•5•2•Updated Dec 29, 2024Dec 29, 2024
cram-js
Public
Read CRAM v3 and v2 in node or in the browser
genomics
TypeScript
•
MIT License
•9•18•8•1•Updated Dec 19, 2024Dec 19, 2024
tabix-js
Public
Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
TypeScript
•
MIT License
•5•14•2•0•Updated Dec 18, 2024Dec 18, 2024
indexedfasta-js
Public
Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
TypeScript
•
MIT License
•4•12•0•1•Updated Dec 18, 2024Dec 18, 2024
abortable-promise-cache
Public
add AbortController support to a cache of async requests
TypeScript
•
MIT License
•2•6•1•5•Updated Dec 15, 2024Dec 15, 2024
generic-filehandle
Public
use a subset of the NodeJS promise-based file handle API to access both local and remote files
TypeScript
•6•4•4•3•Updated Dec 12, 2024Dec 12, 2024
twobit-js
Public
Read .2bit files with pure JS. Works in node or webpack.
TypeScript
•
MIT License
•2•4•0•0•Updated Dec 12, 2024Dec 12, 2024
bbi-js
Public
Parser for bigwig and bigbed files
TypeScript
•
MIT License
•6•8•8•0•Updated Dec 12, 2024Dec 12, 2024
trix-js
Public
Read UCSC Trix indexes in pure JavaScript
TypeScript
•
Apache License 2.0
•2•0•0•1•Updated Dec 12, 2024Dec 12, 2024
generic-filehandle2
Public
modernization of the original generic-filehandle, no Buffer polyfill needed
TypeScript
•0•0•0•0•Updated Dec 12, 2024Dec 12, 2024
nclist-js
Public
Read JBrowse v1 nested containment list feature stores from modern JS
TypeScript
•
MIT License
•0•0•0•0•Updated Dec 12, 2024Dec 12, 2024
jbrowse-react-linear-genome-view-vite-demo
Public
TypeScript
•1•0•0•0•Updated Dec 11, 2024Dec 11, 2024
jbrowse-react-app-vite-demo
Public
TypeScript
•0•0•0•0•Updated Dec 11, 2024Dec 11, 2024
jbrowse-react-app-nextjs-demo
Public
TypeScript
•0•1•1•0•Updated Dec 10, 2024Dec 10, 2024
jbrowse-react-linear-genome-view-nextjs-demo
Public
TypeScript
•1•1•1•0•Updated Dec 10, 2024Dec 10, 2024
jbrowse-react-linear-genome-view-rsbuild-demo
Public
TypeScript
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024
jbrowse-react-linear-genome-view-farm-demo
Public
TypeScript
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024
jbrowse-react-linear-genome-view-cra5-demo
Public
TypeScript
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024
jbrowse-react-circular-genome-view-nextjs-demo
Public
TypeScript
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024
jbrowse-react-circular-genome-view-cra5-demo
Public
TypeScript
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024
jbrowse-react-app-rsbuild-demo
Public
TypeScript
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024
jbrowse-react-app-farm-demo
Public
TypeScript
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024