All

36 repositories

apbs-web
Public
APBS web interface
bioinformatics chemistry biophysics
bioinformatics chemistry biophysics
JavaScript
•
Creative Commons Zero v1.0 Universal
•1•1•4•0•Updated May 19, 2026May 19, 2026
apbs-azure-job-queue-function
Public
Python
•0•0•0•0•Updated May 14, 2026May 14, 2026
mmcif_pdbx
Public
Yet another version of PDBx/mmCIF Python implementation
bioinformatics chemistry structural-biology
bioinformatics chemistry structural-biology biophysics
Python
•
Creative Commons Zero v1.0 Universal
•2•9•8•0•Updated Apr 26, 2026Apr 26, 2026
pdb2pqr
Public
PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
bioinformatics chemistry help-wanted
bioinformatics chemistry help-wanted hacktoberfest biophysics
Python
•
Other
•44•170•19•1•Updated Apr 26, 2026Apr 26, 2026
geoflow_c
Public
C++
•2•0•2•1•Updated Sep 6, 2025Sep 6, 2025
apbs-deploy-azure
Public
Python
•0•0•0•0•Updated Jul 22, 2025Jul 22, 2025
apbs-aws
Public
APBS in an AWS environment
bioinformatics chemistry biophysics
bioinformatics chemistry biophysics
Python
•
Creative Commons Zero v1.0 Universal
•2•1•10•1•Updated Dec 11, 2024Dec 11, 2024
apbs
Public
Software for biomolecular electrostatics and solvation calculations
bioinformatics chemistry help-wanted
bioinformatics chemistry help-wanted hacktoberfest biophysics
C
•
Other
•31•130•83•1•Updated Sep 7, 2024Sep 7, 2024
metis-fork
Public
A fork of the METIS code from the Karypis group.
C
•
Other
•0•0•0•0•Updated Dec 11, 2022Dec 11, 2022
FETK
Public
Fork of the Finite Element ToolKit from fetk.org.
applied-mathematics hacktoberfest finite-element-methods
applied-mathematics hacktoberfest finite-element-methods
C
•
Other
•5•4•5•1•Updated Oct 15, 2022Oct 15, 2022
VR
Public
Virtual reality for biomolecular electrostatics
chemistry virtual-reality biophysics
chemistry virtual-reality biophysics
Other
•2•8•0•0•Updated Oct 6, 2022Oct 6, 2022
go2pdb
Public
Extract PDB entries annotated with specific GO codes
bioinformatics structural-bioinformatics
bioinformatics structural-bioinformatics
Python
•
Other
•3•2•1•0•Updated Jul 22, 2022Jul 22, 2022
electrostatics.github.io
Public
APBS & PDB2PQR - software for biomolecular electrostatics and solvation
bioinformatics chemistry hacktoberfest
bioinformatics chemistry hacktoberfest biophysics
Python
•5•31•0•0•Updated Jun 11, 2022Jun 11, 2022
pb_solvers
Public
Analytic and Semi-Analytic solvers for Poisson-Boltzmann equations
GLSL
•7•0•1•0•Updated Jan 21, 2022Jan 21, 2022
apbs-etl
Public
Refactor of PDB2PQR as an ETL program
python
python
Python
•
Other
•0•2•4•0•Updated Jan 4, 2022Jan 4, 2022
pdb2cif
Public
Convert between PDB and CIF formats
bioinformatics chemistry biophysics
bioinformatics chemistry biophysics structural-bioinformatics
Python
•
Creative Commons Zero v1.0 Universal
•1•4•2•0•Updated Nov 14, 2021Nov 14, 2021
cache
Public
Cache for prebuilt packages
1•0•0•0•Updated Sep 30, 2021Sep 30, 2021
pygbe
Public
Python GPU Boundary Element Solver for APBS
0•0•0•0•Updated Jun 23, 2021Jun 23, 2021
apbs-rest
Public archive
Web server and RESTful backend services for APBS and PDB2PQR
bioinformatics chemistry biophysics
bioinformatics chemistry biophysics
JavaScript
•
Creative Commons Zero v1.0 Universal
•8•4•0•0•Updated May 7, 2021May 7, 2021
osmolytes
Public
This code attempts to predict the influence of osmolytes on protein stability
chemistry biochemistry hacktoberfest
chemistry biochemistry hacktoberfest biophysics
Python
•
Creative Commons Zero v1.0 Universal
•4•1•2•0•Updated Mar 30, 2021Mar 30, 2021
old_pdb
Public archive
Reading and writing old-format PDB data
bioinformatics chemistry biology
bioinformatics chemistry biology
Python
•
Creative Commons Zero v1.0 Universal
•0•1•3•0•Updated Mar 1, 2021Mar 1, 2021
TABIPB
Public
This TABIPB repo serves as a submodule to APBS, and also works as a standalone distribution.
C
•2•0•0•0•Updated Nov 2, 2020Nov 2, 2020
apbs-pdb2pqr
Public archive
APBS - software for biomolecular electrostatics and solvation
bioinformatics chemistry biophysics
bioinformatics chemistry biophysics
62•132•0•0•Updated Jul 27, 2020Jul 27, 2020
propka-3.1
Public archive
PROPKA predicts the pKa values of ionizable groups in proteins and protein-ligand complexes based in the 3D structure.
Python
•
GNU Lesser General Public License v2.1
•76•0•0•0•Updated Jun 19, 2020Jun 19, 2020
UQ
Public
UQ toolkit for APBS
MATLAB
•0•0•0•0•Updated Jan 10, 2020Jan 10, 2020
2017-apbs-paper
Public archive
2017 APBS update paper
TeX
•0•0•0•0•Updated Aug 21, 2017Aug 21, 2017
GIBS
Public
GIBS: Grand Canonical Monte Carlo (GCMC) simulation program for simulating ion-biomolecule interactions with molecular solvent models
C++
•4•6•1•0•Updated Jul 27, 2017Jul 27, 2017
pdb2pqr_flask
Public archive
Trying to bring the PDB2PQR web server into the 21st century
CSS
•3•0•0•0•Updated Dec 27, 2016Dec 27, 2016
APBS_Sphinx
Public archive
APBS Rewrite
C++
•3•1•29•0•Updated Aug 7, 2016Aug 7, 2016
PB-AM-deprecated
Public archive
Poisson-Boltzmann Analytical Method
C++
•0•1•6•0•Updated Jun 15, 2016Jun 15, 2016

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APBS, PDB2PQR, and related software

All

All

36 repositories

apbs-web

apbs-azure-job-queue-function

mmcif_pdbx

pdb2pqr

geoflow_c

apbs-deploy-azure

apbs-aws

apbs

metis-fork

FETK

VR

go2pdb

electrostatics.github.io

pb_solvers

apbs-etl

pdb2cif

cache

pygbe

apbs-rest

osmolytes

old_pdb

TABIPB

apbs-pdb2pqr

propka-3.1

UQ

2017-apbs-paper

GIBS

pdb2pqr_flask

APBS_Sphinx

PB-AM-deprecated

All

All

Repositories list

36 repositories